Transcript: Human NM_145914.3

Homo sapiens zinc finger and SCAN domain containing 21 (ZSCAN21), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-08-02
Taxon:
Homo sapiens (human)
Gene:
ZSCAN21 (7589)
Length:
2009
CDS:
165..1586

Additional Resources:

NCBI RefSeq record:
NM_145914.3
NBCI Gene record:
ZSCAN21 (7589)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_145914.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000015018 GCGTAGTTAAACAGACGTGTA pLKO.1 1855 3UTR 100% 4.050 5.670 N ZSCAN21 n/a
2 TRCN0000274184 CTTAGAGAGGCAGTGCGTAAA pLKO_005 872 CDS 100% 10.800 8.640 N ZSCAN21 n/a
3 TRCN0000274234 CCAGGAGAGAGACGTTATATA pLKO_005 978 CDS 100% 15.000 10.500 N ZSCAN21 n/a
4 TRCN0000274235 TCTGTGATTATCGCCAATAAA pLKO_005 840 CDS 100% 15.000 10.500 N ZSCAN21 n/a
5 TRCN0000015020 CCACAGCTCCAACTTCAATAA pLKO.1 1442 CDS 100% 13.200 9.240 N ZSCAN21 n/a
6 TRCN0000274236 CCACAGCTCCAACTTCAATAA pLKO_005 1442 CDS 100% 13.200 9.240 N ZSCAN21 n/a
7 TRCN0000015019 CCAGTCACAAATACGAGTCTT pLKO.1 667 CDS 100% 4.950 3.465 N ZSCAN21 n/a
8 TRCN0000015021 CCTCAGGAACTGCAAAGGAAT pLKO.1 613 CDS 100% 4.950 3.465 N ZSCAN21 n/a
9 TRCN0000015022 GATCCAAGAAAGGTCCGAGAT pLKO.1 738 CDS 100% 4.050 2.835 N ZSCAN21 n/a
10 TRCN0000274185 GATCCAAGAAAGGTCCGAGAT pLKO_005 738 CDS 100% 4.050 2.835 N ZSCAN21 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_145914.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01800 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_01800 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000478659 CAACTTGGCCTGCCTCGGGAAATT pLX_317 27.1% 100% 100% V5 n/a
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