Construct: ORF TRCN0000479678

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010996.1_s317c1
Derived from:
ccsbBroadEn_13001
DNA Barcode:
TTAGAAATTCCACCGCAATTTGCA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FOXP2 (93986)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479678
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 93986 FOXP2 forkhead box P2 NM_014491.4 87.1% 87.1% 1_276del
2 human 93986 FOXP2 forkhead box P2 NM_001172766.3 86.9% 86.9% 1_276del;595_596insAGC
3 human 93986 FOXP2 forkhead box P2 NM_148900.3 85.1% 85.1% 1_276del;397_447del
4 human 93986 FOXP2 forkhead box P2 NM_148898.4 84.1% 84.1% 1_351del
5 human 93986 FOXP2 forkhead box P2 XM_017012801.2 84.1% 84.1% 1_351del
6 human 93986 FOXP2 forkhead box P2 NM_148899.3 46.8% 46.1% (many diffs)
7 human 93986 FOXP2 forkhead box P2 NM_001172767.2 45.2% 44.5% (many diffs)
8 human 93986 FOXP2 forkhead box P2 NR_033767.2 28.3% 1_890del;2760_6601del
9 human 93986 FOXP2 forkhead box P2 NR_033766.2 25.4% (many diffs)
10 mouse 114142 Foxp2 forkhead box P2 NM_053242.4 80.8% 86.7% (many diffs)
11 mouse 114142 Foxp2 forkhead box P2 NM_212435.1 80.8% 86.7% (many diffs)
12 mouse 114142 Foxp2 forkhead box P2 NM_001286607.1 78.4% 83.7% (many diffs)
13 mouse 114142 Foxp2 forkhead box P2 XM_017321341.1 78.2% 83.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1938
ORF length:
1869
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gatgactccc caggtgatca cccctcagca aatgcagcag atccttcagc
121aacaagtcct gtctcctcag cagctacaag cccttctcca acaacagcag gctgtcatgc
181tgcagcagca acaactacaa gagttttaca agaaacagca agagcagtta catcttcagc
241ttttgcagca gcagcagcaa cagcagcagc agcaacaaca gcagcaacaa cagcagcagc
301aacaacaaca acaacagcag caacaacagc agcagcagca gcaacagcag cagcagcagc
361aacagcatcc tggaaagcaa gcgaaagagc agcagcagca gcagcagcag caacagcaat
421tggcagccca gcagcttgtc ttccagcagc agcttctcca gatgcaacaa ctccagcagc
481agcagcatct gctcagcctt cagcgtcagg gactcatctc cattccacct ggccaggcag
541cacttcctgt ccaatcgctg cctcaagctg gcttaagtcc tgctgagatt cagcagttat
601ggaaagaagt gactggagtt cacagtatgg aagacaatgg cattaaacat ggagggctag
661acctcactac taacaattcc tcctcgacta cctcctccaa cacttccaaa gcatcaccac
721caataactca tcattccata gtgaatggac agtcttcagt tctaagtgca agacgagaca
781gctcgtcaca tgaggagact ggggcctctc acactctcta tggccatgga gtttgcaaat
841ggccaggctg tgaaagcatt tgtgaagatt ttggacagtt tttaaagcac cttaacaatg
901aacacgcatt ggatgaccga agcactgctc agtgtcgagt gcaaatgcag gtggtgcaac
961agttagaaat acagctttct aaagaacgcg aacgtcttca agcaatgatg acccacttgc
1021acatgcgacc ctcagagccc aaaccatctc ccaaacctct aaatctggtg tctagtgtca
1081ccatgtcgaa gaatatgttg gagacatccc cacagagctt acctcaaacc cctaccacac
1141caacggcccc agtcaccccg attacccagg gaccctcagt aatcacccca gccagtgtgc
1201ccaatgtggg agccatacga aggcgacatt cagacaaata caacattccc atgtcatcag
1261aaattgcccc aaactatgaa ttttataaaa atgcagatgt cagacctcca tttacttatg
1321caactctcat aaggcaggct atcatggagt catctgacag gcagttaaca cttaatgaaa
1381tttacagctg gtttacacgg acatttgctt acttcaggcg taatgcagca acttggaaga
1441atgcagtacg tcataatctt agcctgcaca agtgttttgt tcgagtagaa aatgttaaag
1501gagcagtatg gactgtggat gaagtagaat accagaagcg aaggtcacaa aagataacag
1561gaagtccaac cttagtaaaa aatataccta ccagtttagg cTATGGAGCA GCTCTTAATG
1621CCAGTTTGCA GGCTGCCTTG GCAGAGAGCA GTTTACCTTT GCTAAGTAAT CCTGGACTGA
1681TAAATAATGC ATCCAGTGGC CTACTGCAGG CCGTCCACGA AGACCTCAAT GGTTCTCTGG
1741ATCACATTGA CAGCAATGGA AACAGTAGTC CGGGCTGCTC ACCTCAGCCG CACATACATT
1801CAATCCACGT CAAGGAAGAG CCAGTGATTG CAGAGGATGA AGACTGCCCA ATGTCCTTAG
1861TGACAACAGC TAATCACAGT CCAGAATTAG AAGACGACAG AGAGATTGAA GAAGAGCCTT
1921TATCTGAAGA TCTGGAATTG CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA
1981TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA
2041GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGATTAGAAA TTCCACCGCA
2101ATTTGCAACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)