Transcript: Human NM_152740.4

Homo sapiens 3-hydroxyisobutyrate dehydrogenase (HIBADH), mRNA.

Source:
NCBI, updated 2019-05-02
Taxon:
Homo sapiens (human)
Gene:
HIBADH (11112)
Length:
1878
CDS:
96..1106

Additional Resources:

NCBI RefSeq record:
NM_152740.4
NBCI Gene record:
HIBADH (11112)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_152740.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000423718 CAACATGCTGTTAGCTATTAG pLKO_005 731 CDS 100% 13.200 18.480 N HIBADH n/a
2 TRCN0000412965 GTCTCTGCTAACTAGCTTAAT pLKO_005 1319 3UTR 100% 13.200 18.480 N HIBADH n/a
3 TRCN0000221915 CTAATAACTATCAGGGTGGAT pLKO.1 904 CDS 100% 2.640 3.696 N HIBADH n/a
4 TRCN0000221913 GCAAAGGGCTACTCAAAGAAA pLKO.1 1038 CDS 100% 5.625 4.500 N HIBADH n/a
5 TRCN0000435034 ATCTGGGAACCTCACGTTTAT pLKO_005 596 CDS 100% 13.200 9.240 N HIBADH n/a
6 TRCN0000221911 CCCACCAGTATCAATGCAATA pLKO.1 405 CDS 100% 10.800 7.560 N HIBADH n/a
7 TRCN0000221914 CCGGAGCAAATGGGATTCTAA pLKO.1 436 CDS 100% 5.625 3.938 N HIBADH n/a
8 TRCN0000221912 GCACTATTGATCCTGCAGTTT pLKO.1 493 CDS 100% 4.950 3.465 N HIBADH n/a
9 TRCN0000041492 AGCGGTGTGTTCTAGGTCAAT pLKO.1 182 CDS 100% 4.950 6.930 N Hibadh n/a
10 TRCN0000324580 AGCGGTGTGTTCTAGGTCAAT pLKO_005 182 CDS 100% 4.950 6.930 N Hibadh n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_152740.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.