Transcript: Human NM_152927.3

Homo sapiens copine 1 (CPNE1), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-09-29
Taxon:
Homo sapiens (human)
Gene:
CPNE1 (8904)
Length:
2037
CDS:
227..1840

Additional Resources:

NCBI RefSeq record:
NM_152927.3
NBCI Gene record:
CPNE1 (8904)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_152927.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000350255 CAGGTGCAATGCTCCGATTAT pLKO_005 851 CDS 100% 13.200 18.480 N CPNE1 n/a
2 TRCN0000007032 CGCTTTGGAATCTATGACATA pLKO.1 449 CDS 100% 4.950 3.960 N CPNE1 n/a
3 TRCN0000320429 CGCTTTGGAATCTATGACATA pLKO_005 449 CDS 100% 4.950 3.960 N CPNE1 n/a
4 TRCN0000007029 CGCATGAATTTGCCTTGAATT pLKO.1 1281 CDS 100% 0.000 0.000 N CPNE1 n/a
5 TRCN0000320430 CGCATGAATTTGCCTTGAATT pLKO_005 1281 CDS 100% 0.000 0.000 N CPNE1 n/a
6 TRCN0000320496 AGAGGCCAGAAACCTAGATAA pLKO_005 658 CDS 100% 13.200 9.240 N CPNE1 n/a
7 TRCN0000007030 CGCGACATTGTGCAGTTTGTA pLKO.1 1658 CDS 100% 5.625 3.938 N CPNE1 n/a
8 TRCN0000007031 GCTCAGGAATTAAAGGACAAT pLKO.1 617 CDS 100% 4.950 3.465 N CPNE1 n/a
9 TRCN0000011063 CTGGGCCACAACCCAACCCTT pLKO.1 1892 3UTR 100% 0.000 0.000 N CPNE1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_152927.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02046 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_02046 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000478746 CCGAATCTTCATATAACAGCATCT pLX_317 28.7% 100% 100% V5 n/a
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