Transcript: Mouse NM_153125.2

Mus musculus SEC16 homolog A, endoplasmic reticulum export factor (Sec16a), mRNA.

Source:
NCBI, updated 2017-06-04
Taxon:
Mus musculus (mouse)
Gene:
Sec16a (227648)
Length:
8754
CDS:
212..7285

Additional Resources:

NCBI RefSeq record:
NM_153125.2
NBCI Gene record:
Sec16a (227648)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_153125.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000375001 ATGCCGAGAACCACCGCTATT pLKO_005 3885 CDS 100% 10.800 8.640 N Sec16a n/a
2 TRCN0000277107 AGCCTGATCAAAGCTATAATT pLKO_005 2775 CDS 100% 15.000 10.500 N Sec16a n/a
3 TRCN0000277110 AGGAGATGCGCAACCTTATTT pLKO_005 1492 CDS 100% 15.000 10.500 N Sec16a n/a
4 TRCN0000197462 CCTAACTTCCAGGTGTTTAAA pLKO.1 5654 CDS 100% 15.000 10.500 N Sec16a n/a
5 TRCN0000277109 CCTAACTTCCAGGTGTTTAAA pLKO_005 5654 CDS 100% 15.000 10.500 N Sec16a n/a
6 TRCN0000277108 ACTTGGCATCCTACTACTATT pLKO_005 3723 CDS 100% 13.200 9.240 N Sec16a n/a
7 TRCN0000197907 GCTGGATAGAATGAATCTAAT pLKO.1 7484 3UTR 100% 13.200 9.240 N Sec16a n/a
8 TRCN0000353480 GTAACTCAGAGCCGGTCATAC pLKO_005 7393 3UTR 100% 10.800 7.560 N Sec16a n/a
9 TRCN0000181459 CCTCTTCGATCCTCAACTGAA pLKO.1 5824 CDS 100% 4.950 3.465 N Sec16a n/a
10 TRCN0000178399 GCACCATCTTTGACATCTGAT pLKO.1 6506 CDS 100% 4.950 3.465 N Sec16a n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_153125.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.