Transcript: Mouse NM_153560.4

Mus musculus family with sequence similarity 102, member A (Fam102a), mRNA.

Source:
NCBI, updated 2017-05-28
Taxon:
Mus musculus (mouse)
Gene:
Fam102a (98952)
Length:
4217
CDS:
729..1907

Additional Resources:

NCBI RefSeq record:
NM_153560.4
NBCI Gene record:
Fam102a (98952)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_153560.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000182472 GACTTGAACCTAGCCGAGTTT pLKO.1 1038 CDS 100% 4.950 6.930 N Fam102a n/a
2 TRCN0000292885 GACTTGAACCTAGCCGAGTTT pLKO_005 1038 CDS 100% 4.950 6.930 N Fam102a n/a
3 TRCN0000177097 CCTGGACTTCAAATTCTATAT pLKO.1 3831 3UTR 100% 13.200 9.240 N Fam102a n/a
4 TRCN0000292818 CCTGGACTTCAAATTCTATAT pLKO_005 3831 3UTR 100% 13.200 9.240 N Fam102a n/a
5 TRCN0000182557 GACTTGACACACCGCAGAAAT pLKO.1 1491 CDS 100% 13.200 9.240 N Fam102a n/a
6 TRCN0000292887 GACTTGACACACCGCAGAAAT pLKO_005 1491 CDS 100% 13.200 9.240 N Fam102a n/a
7 TRCN0000178117 GTAGATGACACTCGAATTGAT pLKO.1 1707 CDS 100% 5.625 3.938 N Fam102a n/a
8 TRCN0000292884 GTAGATGACACTCGAATTGAT pLKO_005 1707 CDS 100% 5.625 3.938 N Fam102a n/a
9 TRCN0000182135 CAAGGTCACCATTGGCATGTT pLKO.1 1139 CDS 100% 4.950 3.465 N Fam102a n/a
10 TRCN0000198952 GAGGTTCACCTTTGTGTGTAA pLKO.1 911 CDS 100% 4.950 3.465 N Fam102a n/a
11 TRCN0000181904 GCATCTATCAGATCGCTCTTT pLKO.1 1646 CDS 100% 4.950 3.465 N Fam102a n/a
12 TRCN0000182473 GCAGAAATACATCCACCAGCA pLKO.1 1504 CDS 100% 2.160 1.512 N Fam102a n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_153560.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10115 pDONR223 100% 53.3% 58.6% None (many diffs) n/a
2 ccsbBroad304_10115 pLX_304 68.3% 53.3% 58.6% V5 (many diffs) n/a
3 TRCN0000480115 ACTTTTGCCAATGGCGAATCCTCA pLX_317 54.5% 53.3% 58.6% V5 (many diffs) n/a
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