Transcript: Human NM_170692.3

Homo sapiens RAS protein activator like 2 (RASAL2), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-29
Taxon:
Homo sapiens (human)
Gene:
RASAL2 (9462)
Length:
15142
CDS:
390..4232

Additional Resources:

NCBI RefSeq record:
NM_170692.3
NBCI Gene record:
RASAL2 (9462)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_170692.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000414673 AGTGTGACTGGTCGCCAATTT pLKO_005 1599 CDS 100% 13.200 18.480 N RASAL2 n/a
2 TRCN0000427135 ATCTCGGACTCTAACTCTTAT pLKO_005 2342 CDS 100% 13.200 18.480 N RASAL2 n/a
3 TRCN0000238018 TGACTAATCCTACGCCAATAC pLKO_005 2659 CDS 100% 10.800 15.120 N Rasal2 n/a
4 TRCN0000238019 AGGACCTTCTATTCGGATTAA pLKO_005 1673 CDS 100% 13.200 10.560 N Rasal2 n/a
5 TRCN0000001405 GCCTTCCACCTCTTCATAGTA pLKO.1 1492 CDS 100% 5.625 4.500 N RASAL2 n/a
6 TRCN0000001404 CCCTCGTGTTCTTGCTGATAT pLKO.1 2627 CDS 100% 13.200 9.240 N RASAL2 n/a
7 TRCN0000435386 GCTTTGAGGTTACCTACTTAA pLKO_005 1210 CDS 100% 13.200 9.240 N RASAL2 n/a
8 TRCN0000434530 TTCTTCGTTTATGGATCATTG pLKO_005 1342 CDS 100% 10.800 7.560 N RASAL2 n/a
9 TRCN0000001406 CCTACGCCAATACAACAGCAA pLKO.1 2667 CDS 100% 2.640 1.848 N RASAL2 n/a
10 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 11513 3UTR 100% 4.950 2.475 Y ERAP2 n/a
11 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 11514 3UTR 100% 13.200 6.600 Y LIAS n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_170692.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.