Transcript: Human NM_172087.2

Homo sapiens TNF superfamily member 13 (TNFSF13), transcript variant beta, mRNA.

Source:
NCBI, updated 2019-07-23
Taxon:
Homo sapiens (human)
Gene:
TNFSF13 (8741)
Length:
2245
CDS:
749..1453

Additional Resources:

NCBI RefSeq record:
NM_172087.2
NBCI Gene record:
TNFSF13 (8741)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_172087.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000358632 CAGTTGCCCTCTGGTTGAGTT pLKO_005 831 CDS 100% 4.950 6.930 N TNFSF13 n/a
2 TRCN0000358565 ATGGCTCTGCTGACCCAACAA pLKO_005 884 CDS 100% 4.950 3.465 N TNFSF13 n/a
3 TRCN0000358631 CCCAACAAACAGAGCTGCAGA pLKO_005 897 CDS 100% 2.640 1.848 N TNFSF13 n/a
4 TRCN0000358567 CAAAGGGCCTCCAGGCAACAT pLKO_005 781 CDS 100% 1.650 1.155 N TNFSF13 n/a
5 TRCN0000204769 GACAGCCAAGAGCTGAGTATA pLKO.1 1509 3UTR 100% 13.200 6.600 Y TNFSF12-TNFSF13 n/a
6 TRCN0000059023 GAGACTCTATTCCGATGTATA pLKO.1 1271 CDS 100% 13.200 6.600 Y TNFSF13 n/a
7 TRCN0000059026 CGCAGGTGTCTTCCATTTACA pLKO.1 1339 CDS 100% 5.625 2.813 Y TNFSF13 n/a
8 TRCN0000204329 CGCAGGTGTCTTCCATTTACA pLKO.1 1339 CDS 100% 5.625 2.813 Y TNFSF12-TNFSF13 n/a
9 TRCN0000059025 CCTGTTTCAAGACGTGACTTT pLKO.1 1207 CDS 100% 4.950 2.475 Y TNFSF13 n/a
10 TRCN0000186304 CTTCGCAGTCAAATTACTCTT pLKO.1 2006 3UTR 100% 4.950 2.475 Y TNFSF12-TNFSF13 n/a
11 TRCN0000188573 CCAAGGATATGGTGTCCGAAT pLKO.1 1150 CDS 100% 4.050 2.025 Y TNFSF12-TNFSF13 n/a
12 TRCN0000204239 CAAGGGCGAAACTTAACCTCT pLKO.1 1395 CDS 100% 2.640 1.320 Y TNFSF12-TNFSF13 n/a
13 TRCN0000059027 GCGAAACTTAACCTCTCTCCA pLKO.1 1400 CDS 100% 2.640 1.320 Y TNFSF13 n/a
14 TRCN0000059024 GAATCCAGGATGCTGGAGTTT pLKO.1 1167 CDS 100% 0.495 0.248 Y TNFSF13 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_172087.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07292 pDONR223 100% 92% 91.2% None (many diffs) n/a
2 ccsbBroad304_07292 pLX_304 0% 92% 91.2% V5 (many diffs) n/a
3 TRCN0000491921 CGAGAAGCCCCTTATGACGTCTTC pLX_317 47.5% 92% 91.2% V5 (many diffs) n/a
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