Transcript: Mouse NM_175533.3

Mus musculus RIKEN cDNA 5830411N06 gene (5830411N06Rik), transcript variant 3, mRNA.

Source:
NCBI, updated 2017-05-20
Taxon:
Mus musculus (mouse)
Gene:
5830411N06Rik (244234)
Length:
2897
CDS:
81..1421

Additional Resources:

NCBI RefSeq record:
NM_175533.3
NBCI Gene record:
5830411N06Rik (244234)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_175533.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000427126 AGAGCCCACGATGGAACTAAC pLKO_005 636 CDS 100% 10.800 15.120 N 5830411N06Rik n/a
2 TRCN0000125830 GACTGCGAAGAAGAAGGTAAA pLKO.1 1422 CDS 100% 10.800 15.120 N 5830411N06Rik n/a
3 TRCN0000125833 CTAGAGGTTCTTAGAGGACTT pLKO.1 831 CDS 100% 4.050 3.240 N 5830411N06Rik n/a
4 TRCN0000425790 GAGTTTCCTGGGCGGTGATAA pLKO_005 167 CDS 100% 13.200 9.240 N 5830411N06Rik n/a
5 TRCN0000125831 GCTGTGGCTCTGTGAAGTTTA pLKO.1 292 CDS 100% 13.200 9.240 N 5830411N06Rik n/a
6 TRCN0000415511 ACAGAGGCCTTTCGCTGTATG pLKO_005 984 CDS 100% 10.800 7.560 N 5830411N06Rik n/a
7 TRCN0000125829 CCAACAAGATTGTGGGCACAA pLKO.1 2209 3UTR 100% 4.050 2.835 N 5830411N06Rik n/a
8 TRCN0000125832 GTTCCCACTTTGGCTATGGAT pLKO.1 949 CDS 100% 3.000 2.100 N 5830411N06Rik n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_175533.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.