Transcript: Mouse NM_177387.3

Mus musculus uronyl-2-sulfotransferase (Ust), mRNA.

Source:
NCBI, updated 2017-05-14
Taxon:
Mus musculus (mouse)
Gene:
Ust (338362)
Length:
4284
CDS:
427..1650

Additional Resources:

NCBI RefSeq record:
NM_177387.3
NBCI Gene record:
Ust (338362)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_177387.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000103067 CCCTATTTATTCACGAGACAT pLKO.1 913 CDS 100% 4.950 6.930 N Ust n/a
2 TRCN0000103066 CCAGCGAATGAGATACGAGTA pLKO.1 1443 CDS 100% 4.050 5.670 N Ust n/a
3 TRCN0000103069 GCAGATTCTCTACCAGCGAAT pLKO.1 1431 CDS 100% 4.050 5.670 N Ust n/a
4 TRCN0000103068 TGCTGCTCTTACTGGAAAGAT pLKO.1 1298 CDS 100% 5.625 3.938 N Ust n/a
5 TRCN0000103065 CGTCAGTAGATTTCTGTCTAA pLKO.1 1002 CDS 100% 4.950 3.465 N Ust n/a
6 TRCN0000431765 GAACAAATGGAACTGATTAAA pLKO_005 871 CDS 100% 15.000 12.000 N UST n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_177387.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02309 pDONR223 100% 90.1% 95.8% None (many diffs) n/a
2 ccsbBroad304_02309 pLX_304 0% 90.1% 95.8% V5 (many diffs) n/a
3 TRCN0000476527 ATCGGCACTGATTAGATTTTTAGA pLX_317 17.5% 90.1% 95.8% V5 (many diffs) n/a
Download CSV