Transcript: Mouse NM_183355.3

Mus musculus pre B cell leukemia homeobox 1 (Pbx1), transcript variant a, mRNA.

Source:
NCBI, updated 2017-06-26
Taxon:
Mus musculus (mouse)
Gene:
Pbx1 (18514)
Length:
7163
CDS:
666..1958

Additional Resources:

NCBI RefSeq record:
NM_183355.3
NBCI Gene record:
Pbx1 (18514)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_183355.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000020389 CGAAGCAATCAGCAAACACAA pLKO.1 2058 3UTR 100% 4.950 3.960 N PBX1 n/a
2 TRCN0000274077 CGAAGCAATCAGCAAACACAA pLKO_005 2058 3UTR 100% 4.950 3.960 N PBX1 n/a
3 TRCN0000020391 GCATCAGTGCTAATGGAGGTT pLKO.1 1858 CDS 100% 2.640 2.112 N PBX1 n/a
4 TRCN0000274136 GCATCAGTGCTAATGGAGGTT pLKO_005 1858 CDS 100% 2.640 2.112 N PBX1 n/a
5 TRCN0000321052 TCAAGAGGAAGCCAATATTTA pLKO_005 1559 CDS 100% 15.000 10.500 N Pbx1 n/a
6 TRCN0000240253 TCCCTGTGGTAGTAGTATTAA pLKO_005 5004 3UTR 100% 15.000 10.500 N LOC676870 n/a
7 TRCN0000240254 TTCAAGAGGAAGCCAATATTT pLKO_005 1558 CDS 100% 15.000 10.500 N LOC676870 n/a
8 TRCN0000274085 TTCAAGAGGAAGCCAATATTT pLKO_005 1558 CDS 100% 15.000 10.500 N PBX1 n/a
9 TRCN0000320979 ACTCTCACAGATCAGACAAAT pLKO_005 1124 CDS 100% 13.200 9.240 N Pbx1 n/a
10 TRCN0000350558 AGGCGGAAGAGACGGAATTTC pLKO_005 1365 CDS 100% 13.200 9.240 N Pbx1 n/a
11 TRCN0000020393 CATGTCAAACTCTGGAGATTT pLKO.1 1682 CDS 100% 13.200 9.240 N PBX1 n/a
12 TRCN0000274138 CATGTCAAACTCTGGAGATTT pLKO_005 1682 CDS 100% 13.200 9.240 N PBX1 n/a
13 TRCN0000240255 GAGGCGGAAGAGACGGAATTT pLKO_005 1364 CDS 100% 13.200 9.240 N LOC676870 n/a
14 TRCN0000240257 GGATACCCTTCGCCATGTTAT pLKO_005 1778 CDS 100% 13.200 9.240 N LOC676870 n/a
15 TRCN0000240256 ACAGTCTCCCAGGTATCAAAC pLKO_005 1491 CDS 100% 10.800 7.560 N LOC676870 n/a
16 TRCN0000012577 CTCACAGATCAGACAAATCTA pLKO.1 1127 CDS 100% 5.625 3.938 N Pbx1 n/a
17 TRCN0000012576 GCGGAAGAGACGGAATTTCAA pLKO.1 1367 CDS 100% 5.625 3.938 N Pbx1 n/a
18 TRCN0000012575 GCCTGCCTTGTTTAATGTGTT pLKO.1 887 CDS 100% 4.950 3.465 N Pbx1 n/a
19 TRCN0000321049 GCCTGCCTTGTTTAATGTGTT pLKO_005 887 CDS 100% 4.950 3.465 N Pbx1 n/a
20 TRCN0000012574 GCCAATATTTATGCTGCCAAA pLKO.1 1569 CDS 100% 4.050 2.835 N Pbx1 n/a
21 TRCN0000020390 GCCTTGTTTAATGTGTTGTGT pLKO.1 891 CDS 100% 3.000 2.100 N PBX1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_183355.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.