Transcript: Human NM_198204.2

Homo sapiens MAX dimerization protein MLX (MLX), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-30
Taxon:
Homo sapiens (human)
Gene:
MLX (6945)
Length:
2360
CDS:
26..760

Additional Resources:

NCBI RefSeq record:
NM_198204.2
NBCI Gene record:
MLX (6945)

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_198204.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000329897 GTGTAGTGTCCAGAGCTAATA pLKO_005 135 CDS 100% 13.200 18.480 N MLX n/a
2 TRCN0000329818 CAAGGATGTCACCGCCCTAAA pLKO_005 469 CDS 100% 10.800 15.120 N MLX n/a
3 TRCN0000015719 GCCTACAAGGAGTCCTACAAA pLKO.1 224 CDS 100% 5.625 7.875 N MLX n/a
4 TRCN0000329816 GCCTACAAGGAGTCCTACAAA pLKO_005 224 CDS 100% 5.625 7.875 N MLX n/a
5 TRCN0000015718 GCTGGTTTCTACTTGGTGTTT pLKO.1 869 3UTR 100% 4.950 3.960 N MLX n/a
6 TRCN0000329896 GCTGGTTTCTACTTGGTGTTT pLKO_005 869 3UTR 100% 4.950 3.960 N MLX n/a
7 TRCN0000015720 CAGGTCAAGTTCAACGTGTTT pLKO.1 569 CDS 100% 4.950 3.465 N MLX n/a
8 TRCN0000015722 GCAAGGATGTCACCGCCCTAA pLKO.1 468 CDS 100% 1.350 0.945 N MLX n/a
9 TRCN0000353574 AGGTCAAGTTCAACGTGTTTC pLKO_005 570 CDS 100% 10.800 6.480 N MLX n/a
10 TRCN0000015721 ACTTCTCCATTGGCTCCCAAA pLKO.1 351 CDS 100% 4.050 2.430 N MLX n/a
11 TRCN0000294552 ATGATGAGGACAGTGATTATC pLKO_005 195 CDS 100% 13.200 9.240 N Mlx n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_198204.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07040 pDONR223 100% 99.8% 100% None 639G>A n/a
2 ccsbBroad304_07040 pLX_304 0% 99.8% 100% V5 639G>A n/a
3 TRCN0000467156 ACGTAATGGAGAAAGATACAATCC pLX_317 48.6% 99.8% 100% V5 639G>A n/a
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