Transcript: Human NM_198951.3

Homo sapiens transglutaminase 2 (TGM2), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-03
Taxon:
Homo sapiens (human)
Gene:
TGM2 (7052)
Length:
1857
CDS:
73..1719

Additional Resources:

NCBI RefSeq record:
NM_198951.3
NBCI Gene record:
TGM2 (7052)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_198951.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000000241 ACAGCAACCTTCTCATCGAGT pLKO.1 995 CDS 100% 2.640 3.696 N TGM2 n/a
2 TRCN0000272817 ACAGCAACCTTCTCATCGAGT pLKO_005 995 CDS 100% 2.640 3.696 N TGM2 n/a
3 TRCN0000272760 TATCACCCACACCTACAAATA pLKO_005 1386 CDS 100% 13.200 9.240 N TGM2 n/a
4 TRCN0000284851 TTGTGCTGGGCCACTTCATTT pLKO_005 461 CDS 100% 13.200 9.240 N TGM2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_198951.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07061 pDONR223 100% 99.9% 100% None 936C>A n/a
2 ccsbBroad304_07061 pLX_304 0% 99.9% 100% V5 936C>A n/a
3 TRCN0000467099 TGGTAACCACAAGTGCTACCTGCA pLX_317 23.8% 99.9% 100% V5 936C>A n/a
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