Transcript: Human NM_207506.2

Homo sapiens sterile alpha motif domain containing 12 (SAMD12), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-24
Taxon:
Homo sapiens (human)
Gene:
SAMD12 (401474)
Length:
2164
CDS:
130..735

Additional Resources:

NCBI RefSeq record:
NM_207506.2
NBCI Gene record:
SAMD12 (401474)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_207506.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000453177 TACGATGACCAGTGATATAAG pLKO_005 1024 3UTR 100% 13.200 18.480 N SAMD12 n/a
2 TRCN0000447531 GCCAATTGTGAGGGCGCTTTA pLKO_005 982 3UTR 100% 10.800 8.640 N SAMD12 n/a
3 TRCN0000442799 GTGGAATCTCAATCCATTAAA pLKO_005 226 CDS 100% 15.000 10.500 N SAMD12 n/a
4 TRCN0000450163 GAAAGACCACCTTACTATTAG pLKO_005 638 CDS 100% 13.200 9.240 N SAMD12 n/a
5 TRCN0000146833 CGAGAAGAAGTCAGAAATCTA pLKO.1 556 CDS 100% 5.625 3.938 N SAMD12 n/a
6 TRCN0000183768 CTTCACAGAATTTCCATCATA pLKO.1 694 CDS 100% 5.625 3.938 N SAMD12 n/a
7 TRCN0000131130 GCAGCACATCTTACAACAGGT pLKO.1 519 CDS 100% 2.640 1.848 N SAMD12 n/a
8 TRCN0000149215 GTGCGAGAAGAAGTCAGAAAT pLKO.1 553 CDS 100% 13.200 7.920 N SAMD12 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_207506.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05645 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_05645 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000475460 CGTATAAGACGAATGCCGAGTAGC pLX_317 13.7% 100% 100% V5 n/a
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