Transcript: Human NR_026956.1

Homo sapiens long intergenic non-protein coding RNA 663 (LINC00663), long non-coding RNA.

Source:
NCBI, updated 2018-05-24
Taxon:
Homo sapiens (human)
Gene:
LINC00663 (284440)
Length:
2385
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_026956.1
NBCI Gene record:
LINC00663 (284440)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_026956.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000163191 GCGATGATGACCGTAATGAAA pLKO.1 497 3UTR 100% 5.625 7.875 N LINC00663 n/a
2 TRCN0000166791 CTTTGATGGTTCAGTGGACCT pLKO.1 582 3UTR 100% 2.160 3.024 N LINC00663 n/a
3 TRCN0000165335 GCAGTCATCACCTCAGCAATT pLKO.1 449 3UTR 100% 10.800 7.560 N LINC00663 n/a
4 TRCN0000162408 CCTGACATCATAATGGTAGAT pLKO.1 836 3UTR 100% 4.950 3.465 N LINC00663 n/a
5 TRCN0000165252 GCAGTGCAAAGTGCAAGAGTT pLKO.1 614 3UTR 100% 4.950 3.465 N LINC00663 n/a
6 TRCN0000162407 CCCATTGTATCTTGGAAGTAA pLKO.1 1157 3UTR 100% 5.625 2.813 Y LINC00663 n/a
7 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 1947 3UTR 100% 4.950 2.475 Y ERAP2 n/a
8 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 1948 3UTR 100% 13.200 6.600 Y LIAS n/a
9 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 1592 3UTR 100% 5.625 2.813 Y KLHL30 n/a
10 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 1592 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_026956.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10603 pDONR223 100% 14.5% None 1_285del;610C>A;634_2385del n/a
2 ccsbBroad304_10603 pLX_304 0% 14.5% V5 1_285del;610C>A;634_2385del n/a
3 TRCN0000479464 CTTATTGCATCGGGTGTCTCTGGG pLX_317 84.7% 14.5% V5 1_285del;610C>A;634_2385del n/a
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