Transcript: Human NR_047648.1

Homo sapiens Fc fragment of IgG receptor IIc (gene/pseudogene) (FCGR2C), transcript variant 1, non-coding, non-coding RNA.

Source:
NCBI, updated 2019-02-06
Taxon:
Homo sapiens (human)
Gene:
FCGR2C (9103)
Length:
2488
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_047648.1
NBCI Gene record:
FCGR2C (9103)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_047648.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000414699 CATGAATTGCGCCTCAGATTT pLKO_005 1509 3UTR 100% 13.200 6.600 Y FCGR2A n/a
2 TRCN0000029581 CCACAGTCACAGTGGTGATTA pLKO.1 660 3UTR 100% 13.200 6.600 Y FCGR2B n/a
3 TRCN0000029575 GCACCTACTGACGATGATAAA pLKO.1 1000 3UTR 100% 13.200 6.600 Y FCGR2A n/a
4 TRCN0000029577 CCATGTCAACAGTAATAACTA pLKO.1 1050 3UTR 100% 5.625 2.813 Y FCGR2A n/a
5 TRCN0000029578 GAAGAAACCAACAATGACTAT pLKO.1 940 3UTR 100% 4.950 2.475 Y FCGR2A n/a
6 TRCN0000029584 GCCTTGATCTACTGCAGGAAA pLKO.1 826 3UTR 100% 4.950 2.475 Y FCGR2C n/a
7 TRCN0000029582 CATATGCTTCTGTGGACAGCT pLKO.1 178 3UTR 100% 0.000 0.000 Y FCGR2B n/a
8 TRCN0000029574 GCCATCAGAAAGAGACAACTT pLKO.1 919 3UTR 100% 4.950 2.475 Y FCGR2A n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_047648.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06198 pDONR223 100% 34.8% None (many diffs) n/a
2 ccsbBroad304_06198 pLX_304 0% 34.8% V5 (many diffs) n/a
3 TRCN0000472330 ACTGGGGCTCGAGCAGACAGCCGC pLX_317 46.5% 34.8% V5 (many diffs) n/a
4 ccsbBroadEn_06199 pDONR223 100% 34.7% None (many diffs) n/a
5 ccsbBroad304_06199 pLX_304 0% 34.7% V5 (many diffs) n/a
6 TRCN0000475216 TGCCCATTGCGGCCGTTTAATATC pLX_317 25% 34.7% V5 (many diffs) n/a
7 ccsbBroadEn_00546 pDONR223 100% 34.6% None (many diffs) n/a
8 ccsbBroad304_00546 pLX_304 0% 34.6% V5 (many diffs) n/a
9 TRCN0000471042 AAGTCCACGAAAGCGTGGAATATT pLX_317 42.2% 34.6% V5 (many diffs) n/a
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