Transcript: Human NR_073498.2

Homo sapiens KH RNA binding domain containing, signal transduction associated 1 (KHDRBS1), transcript variant 3, non-coding RNA.

Source:
NCBI, updated 2019-07-31
Taxon:
Homo sapiens (human)
Gene:
KHDRBS1 (10657)
Length:
2796
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_073498.2
NBCI Gene record:
KHDRBS1 (10657)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_073498.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000428104 ACCCACAACAGACAAGTAATT pLKO_005 1624 3UTR 100% 13.200 18.480 N KHDRBS1 n/a
2 TRCN0000428752 ACGAAGGCTACGAAGGCTATT pLKO_005 1350 3UTR 100% 10.800 15.120 N KHDRBS1 n/a
3 TRCN0000000045 GTACCGGATATGATGGATGAT pLKO.1 894 3UTR 100% 0.000 0.000 N KHDRBS1 n/a
4 TRCN0000421706 GTATTGGGAAAGGGCTCAATG pLKO_005 717 3UTR 100% 10.800 7.560 N KHDRBS1 n/a
5 TRCN0000000047 CCACAAGGGAATACAATCAAA pLKO.1 663 3UTR 100% 5.625 3.938 N KHDRBS1 n/a
6 TRCN0000000044 GTTCCCAAGTTAGTCAAGTAT pLKO.1 2548 3UTR 100% 5.625 3.938 N KHDRBS1 n/a
7 TRCN0000000046 GACGGCAGAAATTGAGAAGAT pLKO.1 503 3UTR 100% 4.950 3.465 N KHDRBS1 n/a
8 TRCN0000102324 GCATGTCTTCATTGAAGTCTT pLKO.1 809 3UTR 100% 4.950 3.465 N Khdrbs1 n/a
9 TRCN0000326088 GCATGTCTTCATTGAAGTCTT pLKO_005 809 3UTR 100% 4.950 3.465 N Khdrbs1 n/a
10 TRCN0000000048 GATGAGGAGAATTACTTGGAT pLKO.1 549 3UTR 100% 3.000 2.100 N KHDRBS1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_073498.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.