Transcript: Human NR_109826.2

Homo sapiens coiled-coil domain containing 7 (CCDC7), transcript variant 3, non-coding RNA.

Source:
NCBI, updated 2019-07-31
Taxon:
Homo sapiens (human)
Gene:
CCDC7 (79741)
Length:
1820
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_109826.2
NBCI Gene record:
CCDC7 (79741)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_109826.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000128807 CCATTCCATCGAGTAAGACAA pLKO.1 512 3UTR 100% 4.950 6.930 N CCDC7 n/a
2 TRCN0000130260 CCGTGAAAGTCATGTTGTCTA pLKO.1 959 3UTR 100% 4.950 6.930 N CCDC7 n/a
3 TRCN0000128246 GCAGAAATAGTAAGGCTTGTA pLKO.1 889 3UTR 100% 4.950 6.930 N CCDC7 n/a
4 TRCN0000130295 CGGCAAATGTTCCAGCATTAA pLKO.1 350 3UTR 100% 13.200 10.560 N CCDC7 n/a
5 TRCN0000130461 GAAGAACTGAAGAATCGCCTT pLKO.1 919 3UTR 100% 2.160 1.728 N CCDC7 n/a
6 TRCN0000130087 CAAAGCGGAAGACTGATTGAA pLKO.1 1662 3UTR 100% 5.625 3.938 N CCDC7 n/a
7 TRCN0000129232 CTATGGACATTGCGATCAGAA pLKO.1 612 3UTR 100% 4.950 3.465 N CCDC7 n/a
8 TRCN0000129043 GACAACAATGCAAGTGGGTAA pLKO.1 1508 3UTR 100% 4.050 2.835 N CCDC7 n/a
9 TRCN0000129676 CAGAAGATGAAATGATCGGAA pLKO.1 545 3UTR 100% 2.640 1.848 N CCDC7 n/a
10 TRCN0000130183 CAGGTCAATCAGATGGAAGAA pLKO.1 799 3UTR 100% 4.950 2.970 N CCDC7 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_109826.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05247 pDONR223 100% 72.8% None 1_309del;1105_1106ins76;1692_1820del n/a
2 ccsbBroad304_05247 pLX_304 0% 72.8% V5 1_309del;1105_1106ins76;1692_1820del n/a
3 TRCN0000474906 ACCAACGAGAACCAAGGACGGAGG pLX_317 31.4% 72.8% V5 1_309del;1105_1106ins76;1692_1820del n/a
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