Construct: ORF ccsbBroad304_05247

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000357.1_s304c1, BRDN0000410120
Derived from:
ccsbBroadEn_05247
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CCDC7 (221016)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_05247
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79741 CCDC7 coiled-coil domain containi... NM_001026383.3 100% 100%
2 human 79741 CCDC7 coiled-coil domain containi... NM_145023.6 100% 100%
3 human 79741 CCDC7 coiled-coil domain containi... NR_109826.2 72.8% 1_309del;1105_1106ins76;1692_1820del
4 human 79741 CCDC7 coiled-coil domain containi... XM_011519688.3 68% 67.8% 1455C>A;1456_1457insG;1458_2139del
5 human 79741 CCDC7 coiled-coil domain containi... XM_017016651.1 58.9% 58.8% 1455C>A;1456_1457insG;1458_2469del
6 human 79741 CCDC7 coiled-coil domain containi... XM_017016650.2 57.6% 57.5% 1455C>A;1456_1457insG;1458_2523del
7 human 79741 CCDC7 coiled-coil domain containi... XM_011519686.2 49.4% 49.3% 1455C>A;1456_1457insG;1458_2943del
8 human 79741 CCDC7 coiled-coil domain containi... XM_011519684.3 45.4% 45.3% 1455C>A;1456_1457insG;1458_3201del
9 human 79741 CCDC7 coiled-coil domain containi... XM_017016647.2 45.4% 45.3% 1455C>A;1456_1457insG;1458_3204del
10 human 79741 CCDC7 coiled-coil domain containi... XM_017016644.1 44.3% 44.2% 1455C>A;1456_1457insG;1458_3279del
11 human 79741 CCDC7 coiled-coil domain containi... XM_011519679.1 38.6% 34.1% (many diffs)
12 human 79741 CCDC7 coiled-coil domain containi... XM_006717506.1 37.9% 37.8% 1455C>A;1456_1457insG;1458_3834del
13 human 79741 CCDC7 coiled-coil domain containi... XM_011519678.1 37% 36.9% 1455C>A;1456_1457insG;1458_3930del
14 human 79741 CCDC7 coiled-coil domain containi... XM_011519676.1 37% 36.9% 1455C>A;1456_1457insG;1458_3933del
15 human 79741 CCDC7 coiled-coil domain containi... XM_006717505.1 36.9% 36.8% 1455C>A;1456_1457insG;1458_3942del
16 human 79741 CCDC7 coiled-coil domain containi... XM_011519675.1 36.8% 36.8% 1455C>A;1456_1457insG;1458_3945del
17 human 79741 CCDC7 coiled-coil domain containi... XM_011519674.1 36.7% 36.6% 1455C>A;1456_1457insG;1458_3963del
18 human 79741 CCDC7 coiled-coil domain containi... XM_017016640.1 36.7% 36.6% 1455C>A;1456_1457insG;1458_3963del
19 human 79741 CCDC7 coiled-coil domain containi... XM_011519673.1 36% 35.9% 1455C>A;1456_1457insG;1458_4041del
20 human 79741 CCDC7 coiled-coil domain containi... XM_011519672.1 35.9% 35.9% 1455C>A;1456_1457insG;1458_4044del
21 human 79741 CCDC7 coiled-coil domain containi... XM_017016639.1 35.9% 35.9% 1455C>A;1456_1457insG;1458_4044del
22 human 79741 CCDC7 coiled-coil domain containi... XM_011519670.1 35.9% 35.8% 1455C>A;1456_1457insG;1458_4047del
23 human 79741 CCDC7 coiled-coil domain containi... XM_011519671.1 35.9% 35.8% 1455C>A;1456_1457insG;1458_4047del
24 human 79741 CCDC7 coiled-coil domain containi... XM_011519669.1 35.9% 35.8% 1455C>A;1456_1457insG;1458_4053del
25 human 79741 CCDC7 coiled-coil domain containi... XM_011519666.1 35.7% 35.6% 1455C>A;1456_1457insG;1458_4071del
26 human 79741 CCDC7 coiled-coil domain containi... XM_011519667.1 35.7% 35.6% 1455C>A;1456_1457insG;1458_4071del
27 human 79741 CCDC7 coiled-coil domain containi... XM_017016638.1 35.4% 35.3% 1455C>A;1456_1457insG;1458_4110del
28 human 79741 CCDC7 coiled-coil domain containi... XM_011519664.1 35.1% 35% 1455C>A;1456_1457insG;1458_4140del
29 human 79741 CCDC7 coiled-coil domain containi... XM_011519677.1 35% 31.4% (many diffs)
30 human 79741 CCDC7 coiled-coil domain containi... NM_001321115.2 35% 34.9% 1455C>A;1456_1457insG;1458_4155del
31 human 79741 CCDC7 coiled-coil domain containi... XM_011519663.1 35% 34.9% 1455C>A;1456_1457insG;1458_4155del
32 human 79741 CCDC7 coiled-coil domain containi... XM_024448165.1 34.5% 34.4% (many diffs)
33 human 79741 CCDC7 coiled-coil domain containi... XM_024448166.1 34.2% 34.1% (many diffs)
34 human 79741 CCDC7 coiled-coil domain containi... XM_011519668.1 32.8% 32.7% (many diffs)
35 human 79741 CCDC7 coiled-coil domain containi... XM_017016641.1 21.2% 20.9% (many diffs)
36 human 79741 CCDC7 coiled-coil domain containi... XM_011519680.3 19.1% 19% (many diffs)
37 human 79741 CCDC7 coiled-coil domain containi... XM_017016642.1 19.1% 19% (many diffs)
38 human 79741 CCDC7 coiled-coil domain containi... XM_017016643.1 15.5% 15.4% (many diffs)
39 human 79741 CCDC7 coiled-coil domain containi... XM_017016646.1 13% 12.9% (many diffs)
40 human 79741 CCDC7 coiled-coil domain containi... XM_024448167.1 13% 12.9% (many diffs)
41 human 79741 CCDC7 coiled-coil domain containi... XM_024448168.1 13% 12.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1524
ORF length:
1458
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgaa accagtaaag catctgttga ccaccagtaa caaatcggca aatgttccag
121cattaactac taaaaaagga ctacataatt taccattatc acctgagcta aaggaaaaac
181ataatgcaaa attaattcat gataaaattg aaccaatggt cctaagatct ccaccaacag
241gagaatccat tttacggtat gctttgccca ttccatcgag taagacaaag aacttactac
301cagaagatga aatgatcgga aaaattatca aacatctgaa gatggttgtt tccactttgg
361aagaaaccta tggacattgc gatcagaatg gagaagaacc atttgtaaag catgaacatg
421aagaattatc tttatctgtt ggggatgata tgaattcatt cttgacatat tgttcgcaat
481ttgcagctca gctagaagaa gcacttaaag aagaacaaaa tattttggaa tctcttttta
541agtggtttca gtggcaggtc aatcagatgg aagaaataag taaagatcaa actcttttac
601aagcagagcc tccaaaacct gacaaaacag tcattttaaa tattgcagaa atagtaaggc
661ttgtacaaag atttgaagaa ctgaagaatc gccttaaaca gaggtctaaa tcctccgtga
721aagtcatgtt gtctaaaact atggataaag aaaatcgacc agaagcagtg aaaagttgtg
781aagctctggc acagaaaatt gaagaattct tagaagccca ctcaactgat gaatttaaag
841atgtttctgc aacagaacca caaactgctc attcaatgac taatcgattt aatgccatgt
901tgaaagtatt tgaaaaccag gcaaatatgt tggagagagc tgtaaatgat caagttttgt
961tagatgctga atacaaacag atgcagtgtg attttcagtt gttatcagaa gagaagttgg
1021tgctggaaaa tgaactacaa aagttgaagg acaaagagaa aactaagcct acaaataatc
1081gaacaaagaa agctgtgaaa acagtgaaga aaaaagacaa aggaaaatct gaggattcag
1141aaaagaagat gtctccagaa aaagagttta aaataaaaga agatttggat caagtacaga
1201aagtagcacg tctggaaatt gagaacaaag tccttcagga gcaattgaaa caggctttac
1261aggaagctga aaaagctaag catcaactta actatttcct aaatcaagag aagttactta
1321aaagtgaggg gaaaactgag acaacaatgc aagtgggtaa tagtcaaaca aaagttaaag
1381gtgaagattc aaaaaatata ccattggaga aagaaacaag aaaatcactg gtttcagatt
1441caggtggaca aaggacaagt gataaaatcc aagaatatcc acagatcact gcccaaagcg
1501gaagactgat tgaaaagaga tgctacccaa ctttcttgta caaagtggtt ggtaagccta
1561tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct aaccggtggc
1621gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)