Construct: ORF TRCN0000474906
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000357.1_s317c1
- Derived from:
- ccsbBroadEn_05247
- DNA Barcode:
- ACCAACGAGAACCAAGGACGGAGG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCDC7 (221016)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000474906
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79741 | CCDC7 | coiled-coil domain containi... | NM_001026383.3 | 100% | 100% | |
| 2 | human | 79741 | CCDC7 | coiled-coil domain containi... | NM_145023.6 | 100% | 100% | |
| 3 | human | 79741 | CCDC7 | coiled-coil domain containi... | NR_109826.2 | 72.8% | 1_309del;1105_1106ins76;1692_1820del | |
| 4 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_011519688.3 | 68% | 67.8% | 1455C>A;1456_1457insG;1458_2139del |
| 5 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_017016651.1 | 58.9% | 58.8% | 1455C>A;1456_1457insG;1458_2469del |
| 6 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_017016650.2 | 57.6% | 57.5% | 1455C>A;1456_1457insG;1458_2523del |
| 7 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_011519686.2 | 49.4% | 49.3% | 1455C>A;1456_1457insG;1458_2943del |
| 8 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_011519684.3 | 45.4% | 45.3% | 1455C>A;1456_1457insG;1458_3201del |
| 9 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_017016647.2 | 45.4% | 45.3% | 1455C>A;1456_1457insG;1458_3204del |
| 10 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_017016644.1 | 44.3% | 44.2% | 1455C>A;1456_1457insG;1458_3279del |
| 11 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_011519679.1 | 38.6% | 34.1% | (many diffs) |
| 12 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_006717506.1 | 37.9% | 37.8% | 1455C>A;1456_1457insG;1458_3834del |
| 13 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_011519678.1 | 37% | 36.9% | 1455C>A;1456_1457insG;1458_3930del |
| 14 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_011519676.1 | 37% | 36.9% | 1455C>A;1456_1457insG;1458_3933del |
| 15 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_006717505.1 | 36.9% | 36.8% | 1455C>A;1456_1457insG;1458_3942del |
| 16 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_011519675.1 | 36.8% | 36.8% | 1455C>A;1456_1457insG;1458_3945del |
| 17 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_011519674.1 | 36.7% | 36.6% | 1455C>A;1456_1457insG;1458_3963del |
| 18 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_017016640.1 | 36.7% | 36.6% | 1455C>A;1456_1457insG;1458_3963del |
| 19 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_011519673.1 | 36% | 35.9% | 1455C>A;1456_1457insG;1458_4041del |
| 20 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_011519672.1 | 35.9% | 35.9% | 1455C>A;1456_1457insG;1458_4044del |
| 21 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_017016639.1 | 35.9% | 35.9% | 1455C>A;1456_1457insG;1458_4044del |
| 22 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_011519670.1 | 35.9% | 35.8% | 1455C>A;1456_1457insG;1458_4047del |
| 23 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_011519671.1 | 35.9% | 35.8% | 1455C>A;1456_1457insG;1458_4047del |
| 24 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_011519669.1 | 35.9% | 35.8% | 1455C>A;1456_1457insG;1458_4053del |
| 25 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_011519666.1 | 35.7% | 35.6% | 1455C>A;1456_1457insG;1458_4071del |
| 26 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_011519667.1 | 35.7% | 35.6% | 1455C>A;1456_1457insG;1458_4071del |
| 27 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_017016638.1 | 35.4% | 35.3% | 1455C>A;1456_1457insG;1458_4110del |
| 28 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_011519664.1 | 35.1% | 35% | 1455C>A;1456_1457insG;1458_4140del |
| 29 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_011519677.1 | 35% | 31.4% | (many diffs) |
| 30 | human | 79741 | CCDC7 | coiled-coil domain containi... | NM_001321115.2 | 35% | 34.9% | 1455C>A;1456_1457insG;1458_4155del |
| 31 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_011519663.1 | 35% | 34.9% | 1455C>A;1456_1457insG;1458_4155del |
| 32 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_024448165.1 | 34.5% | 34.4% | (many diffs) |
| 33 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_024448166.1 | 34.2% | 34.1% | (many diffs) |
| 34 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_011519668.1 | 32.8% | 32.7% | (many diffs) |
| 35 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_017016641.1 | 21.2% | 20.9% | (many diffs) |
| 36 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_011519680.3 | 19.1% | 19% | (many diffs) |
| 37 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_017016642.1 | 19.1% | 19% | (many diffs) |
| 38 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_017016643.1 | 15.5% | 15.4% | (many diffs) |
| 39 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_017016646.1 | 13% | 12.9% | (many diffs) |
| 40 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_024448167.1 | 13% | 12.9% | (many diffs) |
| 41 | human | 79741 | CCDC7 | coiled-coil domain containi... | XM_024448168.1 | 13% | 12.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1524
- ORF length:
- 1458
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgaa accagtaaag catctgttga ccaccagtaa caaatcggca aatgttccag 121 cattaactac taaaaaagga ctacataatt taccattatc acctgagcta aaggaaaaac 181 ataatgcaaa attaattcat gataaaattg aaccaatggt cctaagatct ccaccaacag 241 gagaatccat tttacggtat gctttgccca ttccatcgag taagacaaag aacttactac 301 cagaagatga aatgatcgga aaaattatca aacatctgaa gatggttgtt tccactttgg 361 aagaaaccta tggacattgc gatcagaatg gagaagaacc atttgtaaag catgaacatg 421 aagaattatc tttatctgtt ggggatgata tgaattcatt cttgacatat tgttcgcaat 481 ttgcagctca gctagaagaa gcacttaaag aagaacaaaa tattttggaa tctcttttta 541 agtggtttca gtggcaggtc aatcagatgg aagaaataag taaagatcaa actcttttac 601 aagcagagcc tccaaaacct gacaaaacag tcattttaaa tattgcagaa atagtaaggc 661 ttgtacaaag atttgaagaa ctgaagaatc gccttaaaca gaggtctaaa tcctccgtga 721 aagtcatgtt gtctaaaact atggataaag aaaatcgacc agaagcagtg aaaagttgtg 781 aagctctggc acagaaaatt gaagaattct tagaagccca ctcaactgat gaatttaaag 841 atgtttctgc aacagaacca caaactgctc attcaatgac taatcgattt aatgccatgt 901 tgaaagtatt tgaaaaccag gcaaatatgt tggagagagc tgtaaatgat caagttttgt 961 tagatgctga atacaaacag atgcagtgtg attttcagtt gttatcagaa gagaagttgg 1021 tgctggaaaa tgaactacaa aagttgaagg acaaagagaa aactaagccT ACAAATAATC 1081 GAACAAAGAA AGCTGTGAAA ACAGTGAAGA AAAAAGACAA AGGAAAATCT GAGGATTCAG 1141 AAAAGAAGAT GTCTCCAGAA AAAGAGTTTA AAATAAAAGA AGATTTGGAT CAAGTACAGA 1201 AAGTAGCACG TCTGGAAATT GAGAACAAAG TCCTTCAGGA GCAATTGAAA CAGGCTTTAC 1261 AGGAAGCTGA AAAAGCTAAG CATCAACTTA ACTATTTCCT AAATCAAGAG AAGTTACTTA 1321 AAAGTGAGGG GAAAACTGAG ACAACAATGC AAGTGGGTAA TAGTCAAACA AAAGTTAAAG 1381 GTGAAGATTC AAAAAATATA CCATTGGAGA AAGAAACAAG AAAATCACTG GTTTCAGATT 1441 CAGGTGGACA AAGGACAAGT GATAAAATCC AAGAATATCC ACAGATCACT GCCCAAAGCG 1501 GAAGACTGAT TGAAAAGAGA TGCTACCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA 1561 AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC 1621 TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAA CCAACGAGAA 1681 CCAAGGACGG AGGACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag 1741 att