Transcript: Mouse NR_111899.1

Mus musculus tumor protein D52-like 2 (Tpd52l2), transcript variant 8, non-coding RNA.

Source:
NCBI, updated 2017-06-26
Taxon:
Mus musculus (mouse)
Gene:
Tpd52l2 (66314)
Length:
3434
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_111899.1
NBCI Gene record:
Tpd52l2 (66314)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NR_111899.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000313076 ATACACTTACCTAGGTAATAT pLKO_005 1042 3UTR 100% 15.000 21.000 N Tpd52l2 n/a
2 TRCN0000374557 GGCTGCCTTGGCATGAATTAG pLKO_005 787 3UTR 100% 13.200 9.240 N Tpd52l2 n/a
3 TRCN0000162138 CTTGGAGAGTGGAATGAGAAA pLKO.1 363 3UTR 100% 4.950 3.465 N TPD52L2 n/a
4 TRCN0000087990 GACCTCTACAAGAAGACTCAA pLKO.1 396 3UTR 100% 4.950 3.465 N Tpd52l2 n/a
5 TRCN0000312145 GACCTCTACAAGAAGACTCAA pLKO_005 396 3UTR 100% 4.950 3.465 N Tpd52l2 n/a
6 TRCN0000087988 GCTGAAGAAGAGCACACCATT pLKO.1 2074 3UTR 100% 4.950 3.465 N Tpd52l2 n/a
7 TRCN0000159392 GACCATAAAGTCTAAGGTTGT pLKO.1 542 3UTR 100% 4.050 2.835 N TPD52L2 n/a
8 TRCN0000280922 GACCATAAAGTCTAAGGTTGT pLKO_005 542 3UTR 100% 4.050 2.835 N TPD52L2 n/a
9 TRCN0000087991 GCAGAGAGAATGGCAGCGATA pLKO.1 568 3UTR 100% 4.050 2.835 N Tpd52l2 n/a
10 TRCN0000087989 GCCACCTTCAAGTCATTTGAA pLKO.1 510 3UTR 100% 0.563 0.394 N Tpd52l2 n/a
11 TRCN0000312146 GCCACCTTCAAGTCATTTGAA pLKO_005 510 3UTR 100% 0.563 0.394 N Tpd52l2 n/a
12 TRCN0000166214 CTTGGAGACATGAGGAACTCT pLKO.1 489 3UTR 100% 3.000 2.100 N TPD52L2 n/a
13 TRCN0000280924 CTTGGAGACATGAGGAACTCT pLKO_005 489 3UTR 100% 3.000 2.100 N TPD52L2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_111899.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01699 pDONR223 100% 14.2% None (many diffs) n/a
2 ccsbBroad304_01699 pLX_304 0% 14.2% V5 (many diffs) n/a
3 TRCN0000473459 ACACTAGGGGAACCTCTCCGGAAC pLX_317 79.9% 14.2% V5 (many diffs) n/a
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