Transcript: Human NR_144395.1

Homo sapiens SUZ12 pseudogene 1 (SUZ12P1), transcript variant 4, non-coding RNA.

Source:
NCBI, updated 2018-04-25
Taxon:
Homo sapiens (human)
Gene:
SUZ12P1 (440423)
Length:
3164
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_144395.1
NBCI Gene record:
SUZ12P1 (440423)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_144395.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000038727 CGGAATCTCATAGCACCAATA pLKO.1 237 3UTR 100% 10.800 5.400 Y SUZ12 n/a
2 TRCN0000331118 CGGAATCTCATAGCACCAATA pLKO_005 237 3UTR 100% 10.800 5.400 Y SUZ12 n/a
3 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 1782 3UTR 100% 5.625 2.813 Y KLHL30 n/a
4 TRCN0000123891 CCAGTAATGAATTTGAACCTA pLKO.1 627 3UTR 100% 3.000 1.500 Y Suz12 n/a
5 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 1782 3UTR 100% 5.625 2.813 Y EID2B n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_144395.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12783 pDONR223 100% 5.9% None (many diffs) n/a
2 ccsbBroad304_12783 pLX_304 0% 5.9% V5 (many diffs) n/a
3 TRCN0000478282 TATCTGCTCCACCGGGCTCCGTTG pLX_317 100% 5.9% V5 (many diffs) n/a
Download CSV