Transcript: Human NR_146109.1

Homo sapiens BMS1 pseudogene 14 (BMS1P14), transcript variant 5, non-coding RNA.

Source:
NCBI, updated 2019-01-21
Taxon:
Homo sapiens (human)
Gene:
BMS1P14 (728034)
Length:
4549
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_146109.1
NBCI Gene record:
BMS1P14 (728034)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_146109.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000146331 CCCAGTAACATCTTTGTTGAA pLKO.1 902 3UTR 100% 4.950 2.475 Y BMS1 n/a
2 TRCN0000278475 CCCAGTAACATCTTTGTTGAA pLKO_005 902 3UTR 100% 4.950 2.475 Y BMS1 n/a
3 TRCN0000168428 GAAGACCACAATGGAAGACAA pLKO.1 654 3UTR 100% 4.950 2.475 Y BMS1P20 n/a
4 TRCN0000167923 CAATGGAAGACAAAGGCTTCT pLKO.1 662 3UTR 100% 4.050 2.025 Y BMS1P20 n/a
5 TRCN0000168108 CACAATGGAAGACAAAGGCTT pLKO.1 660 3UTR 100% 2.640 1.320 Y BMS1P20 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_146109.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07487 pDONR223 100% 16.3% None (many diffs) n/a
2 ccsbBroad304_07487 pLX_304 0% 16.3% V5 (many diffs) n/a
3 TRCN0000480950 GACCCCTCCATCATAGCGCCCGAA pLX_317 10.1% 16.3% V5 (many diffs) n/a
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