Construct: ORF TRCN0000472196

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010165.1_s317c1
Derived from:
ccsbBroadEn_12352
DNA Barcode:
TGGTCCTCCGCTTATAAGAGGATC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RIMKLB (57494)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472196
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57494 RIMKLB ribosomal modification prot... XM_011520790.1 99.8% 100% 792T>C
2 human 57494 RIMKLB ribosomal modification prot... XM_024449092.1 99.8% 100% 792T>C
3 human 57494 RIMKLB ribosomal modification prot... XM_024449093.1 99.8% 100% 792T>C
4 human 57494 RIMKLB ribosomal modification prot... XM_024449094.1 99.8% 100% 792T>C
5 human 57494 RIMKLB ribosomal modification prot... XM_024449095.1 92.9% 91.8% (many diffs)
6 human 57494 RIMKLB ribosomal modification prot... NM_001352267.1 74.2% 73.9% (many diffs)
7 human 57494 RIMKLB ribosomal modification prot... NM_001352268.1 74.2% 73.9% (many diffs)
8 human 57494 RIMKLB ribosomal modification prot... NM_001352269.1 74.2% 73.9% (many diffs)
9 human 57494 RIMKLB ribosomal modification prot... NM_001352270.1 74.2% 73.9% (many diffs)
10 human 57494 RIMKLB ribosomal modification prot... NM_001352271.1 74.2% 73.9% (many diffs)
11 human 57494 RIMKLB ribosomal modification prot... NM_020734.4 74.2% 73.9% (many diffs)
12 human 57494 RIMKLB ribosomal modification prot... NM_001297776.2 74.1% 73.9% (many diffs)
13 human 57494 RIMKLB ribosomal modification prot... XM_017019683.1 74.1% 73.9% (many diffs)
14 human 57494 RIMKLB ribosomal modification prot... XM_017019684.1 74.1% 73.9% (many diffs)
15 human 57494 RIMKLB ribosomal modification prot... XM_017019685.2 74.1% 73.9% (many diffs)
16 human 57494 RIMKLB ribosomal modification prot... XM_017019686.1 74.1% 73.9% (many diffs)
17 human 57494 RIMKLB ribosomal modification prot... XM_017019687.1 74.1% 73.9% (many diffs)
18 human 57494 RIMKLB ribosomal modification prot... XM_024449085.1 74.1% 73.9% (many diffs)
19 human 57494 RIMKLB ribosomal modification prot... XM_024449086.1 74.1% 73.9% (many diffs)
20 human 57494 RIMKLB ribosomal modification prot... XM_024449087.1 74.1% 73.9% (many diffs)
21 human 57494 RIMKLB ribosomal modification prot... XM_024449088.1 74.1% 73.9% (many diffs)
22 human 57494 RIMKLB ribosomal modification prot... XM_024449089.1 74.1% 73.9% (many diffs)
23 human 57494 RIMKLB ribosomal modification prot... XM_024449090.1 74.1% 73.9% (many diffs)
24 human 57494 RIMKLB ribosomal modification prot... XM_024449091.1 74.1% 73.9% (many diffs)
25 human 57494 RIMKLB ribosomal modification prot... NR_147945.2 54.9% 1_275del;1067T>C;1197_1673del
26 human 57494 RIMKLB ribosomal modification prot... NR_123740.2 54.8% 1_275del;1067T>C;1197_1676del
27 human 57494 RIMKLB ribosomal modification prot... NR_147947.2 52.2% 1_359del;1151T>C;1281_1760del
28 human 57494 RIMKLB ribosomal modification prot... NR_147950.2 52.2% 1_363del;1155T>C;1285_1761del
29 human 57494 RIMKLB ribosomal modification prot... NR_147949.2 52.1% 1_363del;1155T>C;1285_1764del
30 human 57494 RIMKLB ribosomal modification prot... NR_147948.2 35.5% 1_1193del;1985T>C;2115_2591del
31 human 57494 RIMKLB ribosomal modification prot... NR_147946.2 35.4% 1_1193del;1985T>C;2115_2594del
32 mouse 108653 Rimklb ribosomal modification prot... NM_027664.1 66.7% 71.6% (many diffs)
33 mouse 108653 Rimklb ribosomal modification prot... XM_011241115.1 66.7% 71.6% (many diffs)
34 mouse 108653 Rimklb ribosomal modification prot... XM_011241116.2 66.7% 71.6% (many diffs)
35 mouse 108653 Rimklb ribosomal modification prot... XM_011241117.1 66.7% 71.6% (many diffs)
36 mouse 108653 Rimklb ribosomal modification prot... XM_011241118.2 66.7% 71.6% (many diffs)
37 mouse 108653 Rimklb ribosomal modification prot... XM_011241119.1 66.7% 71.6% (many diffs)
38 mouse 108653 Rimklb ribosomal modification prot... XM_011241120.1 53.8% 57.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
987
ORF length:
921
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtg tagttctgtg gctgccaagt tgtggttttt gacagatcgt cgcatcaggg
121aagactatcc tcaaaaagag attttacgag cattgaaggc caaatgttgt gaggaggaac
181tggactttag ggctgtggtg atggatgagg tggtgctgac aatcgagcaa ggaaacctgg
241gtctgcggat caatggagag ctaatcactg cctacccaca agtggtggta gtcagagtac
301caaccccttg ggtgcaaagt gatagtgaca tcactgtttt gcgccatcta gagaagatgg
361gatgtcggtt aatgaaccga cctcaagcca tcctgaactg cgttaataag ttctggacat
421ttcaagagtt ggctggccat ggtgttcctc tgCCGGATAC TTTCTCTTAT GGTGGCCACG
481AAAATTTTGC TAAAATGATT GATGAGGCTG AAGTTCTGGA GTTCCCAATG GTAGTAAAGA
541ATACGCGGGG TCACAGAGGT AAAGCTGTTT TCTTGGCTCG AGATAAGCAC CATTTGGCTG
601ATCTAAGCCA TCTTATTCGC CATGAAGCGC CATACCTGTT CCAGAAGTAT GTTAAAGAGT
661CTCATGGACG GGATGTACGT GTCATTGTCG TGGGAGGCCG TGTGGTTGGC ACCATGTTAC
721GTTGTTCAAC AGATGGGAGA ATGCAAAGCA ACTGCTCATT AGGTGGTGTG GGGATGATGT
781GCTCATTGAG TGAACAAGGG AAGCAGCTAG CTATCCAGGT GTCTAATATC CTGGGGATGG
841ATGTGTGTGG CATTGACCTG CTGATGAAAG ATGACGGCTC CTTCTGCGTC TGTGAGGCCA
901ATGCAAATCC TTTTCAGGAG CCAAAAAAAC AAATACAAAC AAACAAAAAA ATACCCAGAG
961AAAAAACTTT CCTTCTTCCC CCTTCCTGCC CAACTTTCTT GTACAAAGTG GTTGATATCG
1021GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT
1081AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GATGGTCCTC
1141CGCTTATAAG AGGATCACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga
1201aagatt

Download FASTA (ORF) (Full)