Transcript: Human NM_152724.2

Homo sapiens Ras suppressor protein 1 (RSU1), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-08-04
Taxon:
Homo sapiens (human)
Gene:
RSU1 (6251)
Length:
3657
CDS:
191..865

Additional Resources:

NCBI RefSeq record:
NM_152724.2
NBCI Gene record:
RSU1 (6251)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_152724.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000296173 GAGATTGTTATAAGGTCTTTA pLKO_005 1038 3UTR 100% 13.200 18.480 N RSU1 n/a
2 TRCN0000296172 AGCCATAACAAGCTAACAATG pLKO_005 173 5UTR 100% 10.800 15.120 N RSU1 n/a
3 TRCN0000077851 CCTTAGGGATAACGACCTGAT pLKO.1 520 CDS 100% 4.050 5.670 N RSU1 n/a
4 TRCN0000289193 CCTTAGGGATAACGACCTGAT pLKO_005 520 CDS 100% 4.050 5.670 N RSU1 n/a
5 TRCN0000077848 GCCATGTGTAACAAAGAGAAA pLKO.1 2673 3UTR 100% 4.950 3.960 N RSU1 n/a
6 TRCN0000077849 GCAGGTATTCAAAGCAGAGAA pLKO.1 655 CDS 100% 4.950 3.465 N RSU1 n/a
7 TRCN0000289137 GCAGGTATTCAAAGCAGAGAA pLKO_005 655 CDS 100% 4.950 3.465 N RSU1 n/a
8 TRCN0000077852 CGTACAACAACTTGAGCGAAA pLKO.1 381 CDS 100% 4.050 2.835 N RSU1 n/a
9 TRCN0000256464 GATATTGGGAAGCTCACAAAG pLKO_005 485 CDS 100% 10.800 5.400 Y Rsu1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_152724.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01469 pDONR223 100% 80.8% 80.8% None 0_1ins159 n/a
2 ccsbBroad304_01469 pLX_304 0% 80.8% 80.8% V5 0_1ins159 n/a
3 TRCN0000480478 ATAACCCTTGACATTTCACTACGC pLX_317 42% 80.8% 80.8% V5 0_1ins159 n/a
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