Transcript: Human XM_024450816.1

PREDICTED: Homo sapiens ANKRD40 C-terminal like (ANKRD40CL), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ANKRD40CL (55018)
Length:
671
CDS:
70..534

Additional Resources:

NCBI RefSeq record:
XM_024450816.1
NBCI Gene record:
ANKRD40CL (55018)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_024450816.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000163077 GTGTAGAAGCTACCAACCTTT pLKO.1 129 CDS 100% 4.950 6.930 N ANKRD40CL n/a
2 TRCN0000165974 GATGTGCTGAGGCTGTAGAAA pLKO.1 449 CDS 100% 5.625 3.938 N ANKRD40CL n/a
3 TRCN0000166538 CTTCAGTACCTTCCTTCACTG pLKO.1 307 CDS 100% 4.050 2.835 N ANKRD40CL n/a
4 TRCN0000164210 CCTTACTTCAGTACCTTCCTT pLKO.1 302 CDS 100% 3.000 2.100 N ANKRD40CL n/a
5 TRCN0000166670 CTGAGGCTGTAGAAAGTGCTT pLKO.1 455 CDS 100% 2.640 1.848 N ANKRD40CL n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_024450816.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12137 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_12137 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000468694 TAGAGTAAACGTGTTCCATCCCCG pLX_317 33.8% 100% 100% V5 n/a
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