Transcript: Human XM_017004610.2

PREDICTED: Homo sapiens protein tyrosine phosphatase receptor type N (PTPRN), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PTPRN (5798)
Length:
3531
CDS:
73..2928

Additional Resources:

NCBI RefSeq record:
XM_017004610.2
NBCI Gene record:
PTPRN (5798)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017004610.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000378465 CTATGACCATGCCCGCATAAA pLKO_005 2223 CDS 100% 13.200 18.480 N PTPRN n/a
2 TRCN0000363094 GCCTCCCTCTACCACGTATAT pLKO_005 2473 CDS 100% 13.200 18.480 N PTPRN n/a
3 TRCN0000002887 GTTGTAAATGTTGGAGCTGAT pLKO.1 1207 CDS 100% 4.050 5.670 N PTPRN n/a
4 TRCN0000378469 ACTGCCTCCAAGGGCATATTT pLKO_005 811 CDS 100% 15.000 12.000 N PTPRN n/a
5 TRCN0000002884 CCTGTCCTGCTAGAGAAGAAA pLKO.1 1399 CDS 100% 5.625 3.938 N PTPRN n/a
6 TRCN0000002886 GCTCTAAGGACCAGTTTGAAT pLKO.1 2849 CDS 100% 5.625 3.938 N PTPRN n/a
7 TRCN0000002883 CATCCTGACTTCCTGCCCTAT pLKO.1 2206 CDS 100% 4.050 2.835 N PTPRN n/a
8 TRCN0000002885 GAAAGGACATGGGTAGCAATT pLKO.1 3165 3UTR 100% 10.800 6.480 N PTPRN n/a
9 TRCN0000220459 GCATACATGGAGGATCACCTT pLKO.1 2077 CDS 100% 2.640 1.848 N Ptprn n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017004610.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11079 pDONR223 100% 57.3% 57.2% None 1_1167del;1439_1440ins87 n/a
2 ccsbBroad304_11079 pLX_304 0% 57.3% 57.2% V5 1_1167del;1439_1440ins87 n/a
3 TRCN0000479743 AGTCACTAGGTTGCTAGAGCATCC pLX_317 18.4% 57.3% 57.2% V5 1_1167del;1439_1440ins87 n/a
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