Transcript: Human XM_011527252.3

PREDICTED: Homo sapiens TUB like protein 2 (TULP2), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TULP2 (7288)
Length:
2089
CDS:
300..1895

Additional Resources:

NCBI RefSeq record:
XM_011527252.3
NBCI Gene record:
TULP2 (7288)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011527252.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000422400 GTTATGAGCCCAACGTCTTAG pLKO_005 1471 CDS 100% 10.800 15.120 N TULP2 n/a
2 TRCN0000181021 CCAGACAATTCCGATGCAGAA pLKO.1 693 CDS 100% 4.050 5.670 N TULP2 n/a
3 TRCN0000180636 CGAATCAATGTCCAGCCACTA pLKO.1 1551 CDS 100% 4.050 3.240 N TULP2 n/a
4 TRCN0000423000 AGTTGTCCAAGGCCCTGAAAG pLKO_005 1009 CDS 100% 10.800 7.560 N TULP2 n/a
5 TRCN0000433910 ATGCACACAAGTCACCCAATA pLKO_005 856 CDS 100% 10.800 7.560 N TULP2 n/a
6 TRCN0000178843 CGAAAGAGAAGAAGGAGCAAA pLKO.1 1266 CDS 100% 4.950 3.465 N TULP2 n/a
7 TRCN0000181054 CGGGAGCATTTAACCAGGAAT pLKO.1 1416 CDS 100% 4.950 3.465 N TULP2 n/a
8 TRCN0000179524 GAATGGATGGTGACTGTGTAT pLKO.1 892 CDS 100% 4.950 3.465 N TULP2 n/a
9 TRCN0000074123 CGCCTGTAATCCCAACACTTT pLKO.1 2031 3UTR 100% 4.950 2.475 Y GJD4 n/a
10 TRCN0000166650 CGCCTGTAATCCCAACACTTT pLKO.1 2031 3UTR 100% 4.950 2.475 Y C9orf85 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011527252.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01728 pDONR223 100% 97.9% 97.7% None 1448_1480del n/a
2 ccsbBroad304_01728 pLX_304 0% 97.9% 97.7% V5 1448_1480del n/a
3 TRCN0000469039 GCTGTTCGAGCGCCCTACAACCAT pLX_317 26.8% 97.9% 97.7% V5 1448_1480del n/a
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