Transcript: Human XM_005246371.3

PREDICTED: Homo sapiens dipeptidyl peptidase 4 (DPP4), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
DPP4 (1803)
Length:
3417
CDS:
78..2375

Additional Resources:

NCBI RefSeq record:
XM_005246371.3
NBCI Gene record:
DPP4 (1803)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005246371.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000372103 TCAGTAAAGAGGCGAAGTATT pLKO_005 1456 CDS 100% 13.200 18.480 N DPP4 n/a
2 TRCN0000050776 GACTGAAGTTATACTCCTTAA pLKO.1 235 CDS 100% 10.800 15.120 N DPP4 n/a
3 TRCN0000050773 GCCCAATTTAACGACACAGAA pLKO.1 750 CDS 100% 4.950 6.930 N DPP4 n/a
4 TRCN0000050777 CCCACTTATTGAATACTCCTT pLKO.1 773 CDS 100% 2.640 3.696 N DPP4 n/a
5 TRCN0000372047 GGTCACCAGTGGGTCATAAAT pLKO_005 544 CDS 100% 15.000 10.500 N DPP4 n/a
6 TRCN0000372104 ACACTCTAACTGATTACTTAA pLKO_005 202 CDS 100% 13.200 9.240 N DPP4 n/a
7 TRCN0000031291 CCAAGAAATATCCTCTACTAT pLKO.1 1684 CDS 100% 5.625 3.938 N Dpp4 n/a
8 TRCN0000050775 CCAATGCAACTTCCATACAAA pLKO.1 913 CDS 100% 5.625 3.938 N DPP4 n/a
9 TRCN0000050774 CCAGAAGACAACCTTGACCAT pLKO.1 2100 CDS 100% 2.640 1.848 N DPP4 n/a
10 TRCN0000031293 GCATGCAATCAACAGAAGATT pLKO.1 1847 CDS 100% 5.625 3.938 N Dpp4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005246371.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06116 pDONR223 100% 99.8% 99.6% None 94_95insCAG;275G>A n/a
2 ccsbBroad304_06116 pLX_304 0% 99.8% 99.6% V5 94_95insCAG;275G>A n/a
3 TRCN0000477379 AAACCAAAAGACTGACGCAGTGGA pLX_317 16.9% 99.8% 99.6% V5 94_95insCAG;275G>A n/a
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