Transcript: Human XM_005253294.2

PREDICTED: Homo sapiens serine/threonine kinase receptor associated protein (STRAP), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
STRAP (11171)
Length:
1743
CDS:
473..1243

Additional Resources:

NCBI RefSeq record:
XM_005253294.2
NBCI Gene record:
STRAP (11171)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005253294.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000088834 CGCATATATGACTTGAACAAA pLKO.1 563 CDS 100% 5.625 7.875 N Strap n/a
2 TRCN0000324156 CGCATATATGACTTGAACAAA pLKO_005 563 CDS 100% 5.625 7.875 N Strap n/a
3 TRCN0000060467 CCTATTCACTGTGTGAGATTT pLKO.1 989 CDS 100% 13.200 9.240 N STRAP n/a
4 TRCN0000425074 TACAAGCCAACATCCAATTTC pLKO_005 1494 3UTR 100% 13.200 9.240 N STRAP n/a
5 TRCN0000421807 TATAGTACAGTGGCCTGTTAT pLKO_005 1457 3UTR 100% 13.200 9.240 N STRAP n/a
6 TRCN0000060463 GTCTGTTAGTAGTATGGAATA pLKO.1 742 CDS 100% 10.800 7.560 N STRAP n/a
7 TRCN0000060464 GCATCTCTTCATCCTGAGAAA pLKO.1 875 CDS 100% 4.950 3.465 N STRAP n/a
8 TRCN0000060465 CCTGAAGCAGAACCTAAGGAA pLKO.1 584 CDS 100% 3.000 2.100 N STRAP n/a
9 TRCN0000424480 GTGCTGGAACAACTAACTAAC pLKO_005 1376 3UTR 100% 10.800 6.480 N STRAP n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005253294.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02641 pDONR223 100% 73.1% 73.1% None 0_1ins282 n/a
2 ccsbBroad304_02641 pLX_304 0% 73.1% 73.1% V5 0_1ins282 n/a
3 TRCN0000467404 TGCCATGCGGCTGGGATGGCTATC pLX_317 45.1% 73.1% 73.1% V5 0_1ins282 n/a
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