Transcript: Human XM_005264485.2

PREDICTED: Homo sapiens serine and arginine rich splicing factor 7 (SRSF7), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SRSF7 (6432)
Length:
1017
CDS:
106..777

Additional Resources:

NCBI RefSeq record:
XM_005264485.2
NBCI Gene record:
SRSF7 (6432)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005264485.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000001142 GAACTGTATGGATTGCGAGAA pLKO.1 218 CDS 100% 4.050 5.670 N SRSF7 n/a
2 TRCN0000273460 GAACTGTATGGATTGCGAGAA pLKO_005 218 CDS 100% 4.050 5.670 N SRSF7 n/a
3 TRCN0000273401 GATCAAGATCCAGGTCTATTT pLKO_005 686 CDS 100% 13.200 9.240 N SRSF7 n/a
4 TRCN0000273400 CCTCGACGATCAAGATCTATC pLKO_005 583 CDS 100% 10.800 7.560 N SRSF7 n/a
5 TRCN0000273402 GTCACGGTCTAGATCACATTC pLKO_005 492 CDS 100% 10.800 7.560 N SRSF7 n/a
6 TRCN0000001143 AGGACTGGATGGAAAGGTGAT pLKO.1 300 CDS 100% 4.050 2.835 N SRSF7 n/a
7 TRCN0000001141 GATGCTATGAGTGTGGCGAAA pLKO.1 419 CDS 100% 4.050 2.835 N SRSF7 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005264485.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01525 pDONR223 100% 93.6% 93.6% None 563_564insGTATTTCCA;615_616ins36 n/a
2 ccsbBroad304_01525 pLX_304 0% 93.6% 93.6% V5 563_564insGTATTTCCA;615_616ins36 n/a
3 TRCN0000467489 GCCCAGCAACTTAAATCGTCGGAT pLX_317 50.4% 93.6% 93.6% V5 563_564insGTATTTCCA;615_616ins36 n/a
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