Transcript: Human XM_005266462.4

PREDICTED: Homo sapiens SPT20 homolog, SAGA complex component (SUPT20H), transcript variant X16, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SUPT20H (55578)
Length:
2916
CDS:
222..2564

Additional Resources:

NCBI RefSeq record:
XM_005266462.4
NBCI Gene record:
SUPT20H (55578)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005266462.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000018045 GCGGATGTGTCATAGCAGAAA pLKO.1 637 CDS 100% 4.950 6.930 N SUPT20H n/a
2 TRCN0000342932 GCGGATGTGTCATAGCAGAAA pLKO_005 637 CDS 100% 4.950 6.930 N SUPT20H n/a
3 TRCN0000219055 ATAGTTCCTCAGGTAACTATT pLKO_005 1645 CDS 100% 1.320 1.056 N Supt20 n/a
4 TRCN0000081526 CAGAAGAATTACCTCCTATTT pLKO.1 574 CDS 100% 13.200 9.240 N Supt20 n/a
5 TRCN0000018044 CCACAGATGATCATTCAAATT pLKO.1 1381 CDS 100% 13.200 9.240 N SUPT20H n/a
6 TRCN0000081524 GCAGAAGAATTACCTCCTATT pLKO.1 573 CDS 100% 10.800 7.560 N Supt20 n/a
7 TRCN0000018047 GCTTGTTATGCAAGAGACTTT pLKO.1 422 CDS 100% 4.950 3.465 N SUPT20H n/a
8 TRCN0000342998 GCTTGTTATGCAAGAGACTTT pLKO_005 422 CDS 100% 4.950 3.465 N SUPT20H n/a
9 TRCN0000018043 CCATCAAGTATTCCTCGGAAA pLKO.1 1725 CDS 100% 4.050 2.835 N SUPT20H n/a
10 TRCN0000342933 CCATCAAGTATTCCTCGGAAA pLKO_005 1725 CDS 100% 4.050 2.835 N SUPT20H n/a
11 TRCN0000018046 CCCACAACTTGTAGTCCTCAA pLKO.1 2181 CDS 100% 4.050 2.835 N SUPT20H n/a
12 TRCN0000342934 CCCACAACTTGTAGTCCTCAA pLKO_005 2181 CDS 100% 4.050 2.835 N SUPT20H n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005266462.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08547 pDONR223 100% 99.8% 99.7% None 164_166delAGC;2123C>T n/a
2 ccsbBroad304_08547 pLX_304 0% 99.8% 99.7% V5 164_166delAGC;2123C>T n/a
3 TRCN0000469326 GGACCCTGATTTTGCTTCTAACCA pLX_317 16.2% 99.8% 99.7% V5 164_166delAGC;2123C>T n/a
Download CSV