Construct: ORF TRCN0000469326

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007693.1_s317c1
Derived from:
ccsbBroadEn_08547
DNA Barcode:
GGACCCTGATTTTGCTTCTAACCA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SUPT20H (55578)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000469326
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55578 SUPT20H SPT20 homolog, SAGA complex... NM_001014286.3 99.9% 99.8% 2120C>T
2 human 55578 SUPT20H SPT20 homolog, SAGA complex... XM_005266462.4 99.8% 99.7% 164_166delAGC;2123C>T
3 human 55578 SUPT20H SPT20 homolog, SAGA complex... XM_017020657.2 98.4% 98.3% 1869_1870ins36;2084C>T
4 human 55578 SUPT20H SPT20 homolog, SAGA complex... XM_017020655.1 98.4% 98.2% 0_1ins28;2_3insCGTGCAGA;2084C>T
5 human 55578 SUPT20H SPT20 homolog, SAGA complex... XM_017020656.1 98.4% 98.2% 0_1ins28;2_3insCGTGCAGA;2084C>T
6 human 55578 SUPT20H SPT20 homolog, SAGA complex... XM_005266464.3 98.2% 98.2% 164_166delAGC;1872_1873ins36;2087C>T
7 human 55578 SUPT20H SPT20 homolog, SAGA complex... XM_017020654.1 98.2% 98% (many diffs)
8 human 55578 SUPT20H SPT20 homolog, SAGA complex... XM_024449379.1 96.8% 96.6% (many diffs)
9 human 55578 SUPT20H SPT20 homolog, SAGA complex... XM_005266465.3 93.9% 90.5% 2098_2099ins104;2196_2197ins37
10 human 55578 SUPT20H SPT20 homolog, SAGA complex... NM_001278481.1 93.8% 90.3% 164_166delAGC;2101_2102ins104;2199_2200ins37
11 human 55578 SUPT20H SPT20 homolog, SAGA complex... NM_001278482.1 93.8% 90.3% 164_166delAGC;2101_2102ins104;2199_2200ins37
12 human 55578 SUPT20H SPT20 homolog, SAGA complex... NM_017569.3 93.8% 90.3% 164_166delAGC;2101_2102ins104;2199_2200ins37
13 human 55578 SUPT20H SPT20 homolog, SAGA complex... XM_017020660.2 92.4% 88.9% 1869_1870ins36;2062_2063ins104;2160_2161ins37
14 human 55578 SUPT20H SPT20 homolog, SAGA complex... XM_017020659.1 92.4% 88.8% (many diffs)
15 human 55578 SUPT20H SPT20 homolog, SAGA complex... XM_005266467.3 92.3% 88.8% (many diffs)
16 human 55578 SUPT20H SPT20 homolog, SAGA complex... XM_017020658.1 92.3% 88.7% (many diffs)
17 human 55578 SUPT20H SPT20 homolog, SAGA complex... XM_017020661.1 90.8% 87.2% (many diffs)
18 human 55578 SUPT20H SPT20 homolog, SAGA complex... XM_005266451.4 90.7% 90.6% 1592_1828del;2357C>T
19 human 55578 SUPT20H SPT20 homolog, SAGA complex... XM_024449377.1 90.7% 90.6% 1592_1828del;2357C>T
20 human 55578 SUPT20H SPT20 homolog, SAGA complex... XM_005266447.2 90.6% 90.5% 164_166delAGC;1595_1831del;2360C>T
21 human 55578 SUPT20H SPT20 homolog, SAGA complex... XM_005266449.4 90.6% 90.5% 164_166delAGC;1595_1831del;2360C>T
22 human 55578 SUPT20H SPT20 homolog, SAGA complex... XM_024449375.1 90.6% 90.5% 164_166delAGC;1595_1831del;2360C>T
23 human 55578 SUPT20H SPT20 homolog, SAGA complex... XM_024449376.1 90.6% 90.5% 164_166delAGC;1595_1831del;2360C>T
24 human 55578 SUPT20H SPT20 homolog, SAGA complex... XM_017020653.2 89.3% 89.2% 1592_1828del;2106_2107ins36;2321C>T
25 human 55578 SUPT20H SPT20 homolog, SAGA complex... XM_005266457.4 89.3% 89.1% (many diffs)
26 human 55578 SUPT20H SPT20 homolog, SAGA complex... XM_005266458.4 89.3% 89.1% (many diffs)
27 human 55578 SUPT20H SPT20 homolog, SAGA complex... XM_005266455.2 89.2% 89.1% (many diffs)
28 human 55578 SUPT20H SPT20 homolog, SAGA complex... XM_005266454.4 89.2% 89% (many diffs)
29 human 55578 SUPT20H SPT20 homolog, SAGA complex... XM_005266456.4 89.2% 89% (many diffs)
30 human 55578 SUPT20H SPT20 homolog, SAGA complex... NM_001278480.1 85.3% 82.1% 1592_1828del;2335_2336ins104;2433_2434ins37
31 human 55578 SUPT20H SPT20 homolog, SAGA complex... XM_005266460.2 85.2% 82% (many diffs)
32 human 55578 SUPT20H SPT20 homolog, SAGA complex... XM_024449378.1 85.2% 82% (many diffs)
33 human 55578 SUPT20H SPT20 homolog, SAGA complex... XM_005266461.3 83.8% 80.6% (many diffs)
34 human 55578 SUPT20H SPT20 homolog, SAGA complex... XR_001749621.2 75.8% (many diffs)
35 human 55578 SUPT20H SPT20 homolog, SAGA complex... XR_001749625.2 75.6% (many diffs)
36 human 55578 SUPT20H SPT20 homolog, SAGA complex... XR_001749615.2 60.3% (many diffs)
37 human 55578 SUPT20H SPT20 homolog, SAGA complex... XR_001749612.2 60.3% (many diffs)
38 human 55578 SUPT20H SPT20 homolog, SAGA complex... XR_001749606.2 60% (many diffs)
39 human 55578 SUPT20H SPT20 homolog, SAGA complex... XR_001749609.2 59.9% (many diffs)
40 human 55578 SUPT20H SPT20 homolog, SAGA complex... XR_001749618.2 59.3% (many diffs)
41 human 55578 SUPT20H SPT20 homolog, SAGA complex... XR_001749608.2 59.1% (many diffs)
42 human 55578 SUPT20H SPT20 homolog, SAGA complex... XR_001749611.2 59% (many diffs)
43 human 55578 SUPT20H SPT20 homolog, SAGA complex... XR_001749614.2 58.8% (many diffs)
44 human 55578 SUPT20H SPT20 homolog, SAGA complex... XR_001749616.2 57.6% (many diffs)
45 human 55578 SUPT20H SPT20 homolog, SAGA complex... XR_001749613.2 57.6% (many diffs)
46 human 55578 SUPT20H SPT20 homolog, SAGA complex... XR_001749607.2 57.4% (many diffs)
47 human 55578 SUPT20H SPT20 homolog, SAGA complex... XR_001749610.2 57.3% (many diffs)
48 human 55578 SUPT20H SPT20 homolog, SAGA complex... XR_001749620.2 57% (many diffs)
49 human 55578 SUPT20H SPT20 homolog, SAGA complex... XR_001749624.2 56.9% (many diffs)
50 human 55578 SUPT20H SPT20 homolog, SAGA complex... XR_001749619.2 56.7% (many diffs)
51 human 55578 SUPT20H SPT20 homolog, SAGA complex... XR_001749623.2 56.1% (many diffs)
52 mouse 56790 Supt20 suppressor of Ty 20 XM_006501815.1 86% 87.4% (many diffs)
53 mouse 56790 Supt20 suppressor of Ty 20 XM_006501814.1 85.9% 87.3% (many diffs)
54 mouse 56790 Supt20 suppressor of Ty 20 XM_006501806.2 78.3% 79.8% (many diffs)
55 mouse 56790 Supt20 suppressor of Ty 20 XM_006501807.3 78.3% 79.8% (many diffs)
56 mouse 56790 Supt20 suppressor of Ty 20 XM_006501809.2 78.3% 79.8% (many diffs)
57 mouse 56790 Supt20 suppressor of Ty 20 XM_006501810.1 78.3% 79.7% (many diffs)
58 mouse 56790 Supt20 suppressor of Ty 20 XM_006501801.1 78.2% 79.7% (many diffs)
59 mouse 56790 Supt20 suppressor of Ty 20 XM_006501802.2 78.2% 79.7% (many diffs)
60 mouse 56790 Supt20 suppressor of Ty 20 XM_006501803.1 78.2% 79.7% (many diffs)
61 mouse 56790 Supt20 suppressor of Ty 20 XM_006501804.1 78.2% 79.7% (many diffs)
62 mouse 56790 Supt20 suppressor of Ty 20 XM_006501805.1 78.2% 79.7% (many diffs)
63 mouse 56790 Supt20 suppressor of Ty 20 XM_006501808.1 78.2% 79.6% (many diffs)
64 mouse 56790 Supt20 suppressor of Ty 20 XM_006501812.1 77.3% 78.5% (many diffs)
65 mouse 56790 Supt20 suppressor of Ty 20 XM_006501811.1 77.3% 78.5% (many diffs)
66 mouse 56790 Supt20 suppressor of Ty 20 XM_006501813.1 71.2% 72.9% (many diffs)
67 mouse 56790 Supt20 suppressor of Ty 20 NM_019995.3 59.8% 62.8% (many diffs)
68 mouse 56790 Supt20 suppressor of Ty 20 XR_001783726.1 55.7% (many diffs)
69 mouse 56790 Supt20 suppressor of Ty 20 XR_001783730.1 55.1% (many diffs)
70 mouse 56790 Supt20 suppressor of Ty 20 XR_001783727.1 55% (many diffs)
71 mouse 56790 Supt20 suppressor of Ty 20 XR_001783728.1 52.8% (many diffs)
72 mouse 56790 Supt20 suppressor of Ty 20 XR_375560.3 52.6% (many diffs)
73 mouse 56790 Supt20 suppressor of Ty 20 XR_001783729.1 52.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2403
ORF length:
2337
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgca acaagcttta gaactagctt tggatcgtgc agagtatgtc attgaaagtg
121cccgacagag acctcctaaa aggaaatacc tatcaagtgg aagaaaatct gtatttcaaa
181aactttatga cttgtatatt gaagaatgtg aaaaagaacc tgaagttaag aaattaagaa
241gaaatgtgaa cttgttagag aagcttgtta tgcaagagac tttgtcatgt ttagtggtca
301atctataccc aggaaatgag ggatattctc tgatgctcag gggaaaaaac ggatcagatt
361ccgagaccat tcgactgccc tatgaagaag gagagttgct tgaatatttg gatgcagaag
421aattacctcc tattttggtt gatctcctag aaaaatctca ggttaatatt tttcattgcg
481gatgtgtcat agcagaaata cgtgactaca ggcagtccag taacatgaaa tctcctggtt
541accaaagtcg gcacattctc ttacgtccaa caatgcagac tttaatttgt gatgtacatt
601caataacaag tgataaccac aaatggaccc aggaagacaa acttttgctt gagagccagc
661tcatcctagc tacagctgaa ccactctgtc ttgatccttc tatagcagtc acctgcactg
721caaacagact gctctataac aagcaaaaga tgaacactcg cccaatgaaa cggtgtttca
781agaggtattc cagatcctct ctgaatcggc agcaagatct atctcattgt ccacctcctc
841ctcagctgag gttacttgat ttcttacaaa aaagaaagga aagaaaagca ggtcagcatt
901atgacctcaa aatttctaag gcaggaaatt gtgtagatat gtggaaacgg agtccctgta
961atttggccat accttctgaa gtagatgtgg agaaatatgc taaagtggaa aagtctatca
1021aatctgatga ctcacagcca acagtctggc cagcccatga tgtaaaagat gattatgtat
1081ttgaatgtga agctggtact cagtatcaga aaacaaagct gaccatcttg cagtcgcttg
1141gagatccact ttactatggt aaaatacagc catgtaaagc agatgaagaa agtgacagcc
1201agatgtctcc atcacactcg tccacagatg atcattcaaa ttggttcatt attggatcaa
1261agaccgatgc tgagagggta gtcaatcagt accaagaatt agtccagaat gaagccaaat
1321gtccggtcaa gatgtcacac agctccagtg gctcagccag tctgagtcag gtttctccag
1381ggaaagaaac agatcaaact gaaaccgtgt cagttcagtc ttcggtattg gggaagggtg
1441taaaacatcg acccccacca atcaaacttc cctcaagctc aggaaatagt tcctcaggta
1501actattttac accacaacag acaagcagct ttctcaaatc tccaactcct cctccttctt
1561ctaagccatc aagtattcct cggaaatcat ctgtggatct caatcaagtt agcatgcttt
1621ctccagctgc cctatcacct gccagctcat cacaaagaac cacggccacc caggtcatgg
1681caaactctgc tggacttaac ttcatcaatg tagtgggctc tgtttgtggg gcccaggctt
1741tgatgagtgg ttcaaacccc atgctgggct gtaacactgg tgccataact cctgcaggaa
1801taaacctgag cggccttcta ccctcaggag gtctgctacc aaatgcactg cccagtgcaa
1861tgcaggcagc ttctcaagca ggtgttccat ttggtttaaa aaatacttca agtctcaggc
1921ccttaaatct actccagctt ccaggtggtt cacttatttt taacactctg cagcagcagc
1981aacagcagct ctcccagttt acaccacaac aacctcagca gcccacaact tGTAGTCCTC
2041AACAGCCAGG GGAGCAGGGT TCTGAGCAAG GTTCAACCAG TCAAGAACAG GCCTTATCTG
2101CTCAGCAAGC TGCTGTTATT AACCTTACTG GAGTAGGAAG TTTTATGCAG TCACAGGCAG
2161CTGTGTTGTC TCAGCTTGGC TCTGTCGAGA ACAGACCTGA GCAAAGCCTT CCTCAGCAGA
2221GATTCCAGCT CTCCTCTGCC TTTCAACAGC AGCAGCAACA GATACAACAG TTGCGATTCT
2281TGCAGCATCA AATGGCTATG GCAGCAGCAG CAGCACAAAC AGCTCAGCTA CATCATCATC
2341GGCATACAGG CAGCCAGTCA AAAAGTAAAA TGAAGAGAGG CACGCCAACC ACTCCAAAAT
2401TTTGCCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC
2461TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT
2521GGCTTTATAT ATCTTGTGGA AAGGACGAGG ACCCTGATTT TGCTTCTAAC CAACGCGTTA
2581AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt

Download FASTA (ORF) (Full)