Transcript: Human XM_005267080.4

PREDICTED: Homo sapiens BEN domain containing 3 (BEND3), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
BEND3 (57673)
Length:
6437
CDS:
429..2915

Additional Resources:

NCBI RefSeq record:
XM_005267080.4
NBCI Gene record:
BEND3 (57673)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005267080.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000247561 CCAGTGGCTGTATGACATAAT pLKO_005 4468 3UTR 100% 13.200 9.240 N BEND3 n/a
2 TRCN0000247560 CCATCGACTTCGACAAGTTAG pLKO_005 2026 CDS 100% 10.800 7.560 N BEND3 n/a
3 TRCN0000247563 TAAACGTGTACGAGCTCTTTG pLKO_005 877 CDS 100% 10.800 7.560 N BEND3 n/a
4 TRCN0000449832 ACCTGCGCAAGCAGTACAACT pLKO_005 2197 CDS 100% 4.950 3.465 N Bend3 n/a
5 TRCN0000247564 CCTACAAGAAGCCTCTGTATG pLKO_005 805 CDS 100% 10.800 6.480 N BEND3 n/a
6 TRCN0000247562 TGCAGCTCATCCGCAACTATG pLKO_005 1339 CDS 100% 10.800 6.480 N BEND3 n/a
7 TRCN0000177224 GATCCAGAAGATGTTCTACAT pLKO.1 1013 CDS 100% 4.950 2.970 N Bend3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005267080.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08755 pDONR223 100% 99.9% 99.8% None 1787A>G n/a
2 ccsbBroad304_08755 pLX_304 0% 99.9% 99.8% V5 1787A>G n/a
3 TRCN0000468756 TCAAGCCAGCCGACGTACGTGCCT pLX_317 5.9% 99.9% 99.8% V5 1787A>G n/a
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