Transcript: Human XM_005273177.3

PREDICTED: Homo sapiens proton activated chloride channel 1 (PACC1), transcript variant X5, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PACC1 (55248)
Length:
2422
CDS:
860..1681

Additional Resources:

NCBI RefSeq record:
XM_005273177.3
NBCI Gene record:
PACC1 (55248)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005273177.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000285381 GAAGTCACCTCGCGTTGTTTA pLKO_005 1680 CDS 100% 13.200 18.480 N PACC1 n/a
2 TRCN0000136154 GAACAAGAGTAGTGAGGACTT pLKO.1 1195 CDS 100% 4.050 5.670 N PACC1 n/a
3 TRCN0000275465 GAACAAGAGTAGTGAGGACTT pLKO_005 1195 CDS 100% 4.050 5.670 N PACC1 n/a
4 TRCN0000275464 GTTTGCCAAACTGAGTATAAA pLKO_005 1594 CDS 100% 15.000 10.500 N PACC1 n/a
5 TRCN0000135806 CCACTTTGTAAACGGAGCTAT pLKO.1 1737 3UTR 100% 4.950 3.465 N PACC1 n/a
6 TRCN0000285384 CCACTTTGTAAACGGAGCTAT pLKO_005 1737 3UTR 100% 4.950 3.465 N PACC1 n/a
7 TRCN0000138897 GAAACTCAAGCACCCTGTCAT pLKO.1 910 CDS 100% 4.950 3.465 N PACC1 n/a
8 TRCN0000285389 GAAACTCAAGCACCCTGTCAT pLKO_005 910 CDS 100% 4.950 3.465 N PACC1 n/a
9 TRCN0000135119 CCAAGATATAGTCACTGCCAA pLKO.1 1513 CDS 100% 2.640 1.848 N PACC1 n/a
10 TRCN0000138238 CCTGAACAAGAGTAGTGAGGA pLKO.1 1192 CDS 100% 2.640 1.848 N PACC1 n/a
11 TRCN0000135459 GTGTCTTACAAGGAAGTGGAT pLKO.1 935 CDS 100% 2.640 1.848 N PACC1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005273177.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03561 pDONR223 100% 78% 78% None 0_1ins231 n/a
2 ccsbBroad304_03561 pLX_304 0% 78% 78% V5 0_1ins231 n/a
3 TRCN0000467460 CCCAGTGGGGTCCGGGTCAACTCG pLX_317 41.7% 78% 78% V5 0_1ins231 n/a
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