Transcript: Mouse XM_006498397.3

PREDICTED: Mus musculus Rho GTPase activating protein 15 (Arhgap15), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Arhgap15 (76117)
Length:
2598
CDS:
107..1483

Additional Resources:

NCBI RefSeq record:
XM_006498397.3
NBCI Gene record:
Arhgap15 (76117)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006498397.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000177416 GATTGTTCTTTCTGGTCGAAA pLKO.1 448 CDS 100% 4.950 6.930 N Arhgap15 n/a
2 TRCN0000176755 CCAAACTAAATCCATGATCCT pLKO.1 247 CDS 100% 2.640 3.696 N Arhgap15 n/a
3 TRCN0000177745 CCACTAGAACATCCAATGGTT pLKO.1 350 CDS 100% 3.000 2.400 N Arhgap15 n/a
4 TRCN0000176672 CATGTGTTGAAAGATGTCATT pLKO.1 326 CDS 100% 4.950 3.465 N Arhgap15 n/a
5 TRCN0000197579 GAATCATTCACAGCATGTGTT pLKO.1 313 CDS 100% 4.950 3.465 N Arhgap15 n/a
6 TRCN0000197586 CTTCCTCATATTGGATTGGTT pLKO.1 652 CDS 100% 3.000 2.100 N Arhgap15 n/a
7 TRCN0000429280 GGAAGGTCACTGAACCTATAT pLKO_005 279 CDS 100% 13.200 9.240 N ARHGAP15 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006498397.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08597 pDONR223 100% 78.9% 73.4% None (many diffs) n/a
2 ccsbBroad304_08597 pLX_304 0% 78.9% 73.4% V5 (many diffs) n/a
3 TRCN0000474228 GGCGATTCGTACCCTCACTGGCGC pLX_317 39.5% 78.9% 73.4% V5 (many diffs) n/a
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