Transcript: Mouse XM_006502335.2

PREDICTED: Mus musculus CUGBP, Elav-like family member 3 (Celf3), transcript variant X16, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Celf3 (78784)
Length:
2334
CDS:
74..1258

Additional Resources:

NCBI RefSeq record:
XM_006502335.2
NBCI Gene record:
Celf3 (78784)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006502335.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000098695 CCTGGCTTCAAGAGCCTATTT pLKO.1 1454 3UTR 100% 13.200 10.560 N Celf3 n/a
2 TRCN0000439110 ATGCAAACAGGCCCTACTAAG pLKO_005 1239 CDS 100% 10.800 8.640 N Celf3 n/a
3 TRCN0000098697 GTTTGAACCATTTGGGACTAT pLKO.1 115 CDS 100% 4.950 3.960 N Celf3 n/a
4 TRCN0000005729 GCGCCTCAAAGTCCAGCTAAA pLKO.1 1207 CDS 100% 10.800 7.560 N CELF3 n/a
5 TRCN0000418643 GCGCCTCAAAGTCCAGCTAAA pLKO_005 1207 CDS 100% 10.800 7.560 N Celf3 n/a
6 TRCN0000422671 GCTTTGTGAGTTTCGACAATC pLKO_005 1131 CDS 100% 10.800 7.560 N CELF3 n/a
7 TRCN0000431535 GCTTTGTGAGTTTCGACAATC pLKO_005 1131 CDS 100% 10.800 7.560 N Celf3 n/a
8 TRCN0000098696 CCTCCAGATGTTTGTCCCTTT pLKO.1 1048 CDS 100% 4.050 2.835 N Celf3 n/a
9 TRCN0000098698 CTATGCAGGAATGCAGCACTA pLKO.1 820 CDS 100% 4.050 2.835 N Celf3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006502335.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11611 pDONR223 100% 69.2% 72.8% None (many diffs) n/a
2 ccsbBroad304_11611 pLX_304 0% 69.2% 72.8% V5 (many diffs) n/a
3 TRCN0000475880 TCGTGGCATCAAGGAAGATTCACG pLX_317 23.5% 69.2% 72.8% V5 (many diffs) n/a
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