Construct: ORF TRCN0000475880
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003699.1_s317c1
- Derived from:
- ccsbBroadEn_11611
- DNA Barcode:
- TCGTGGCATCAAGGAAGATTCACG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CELF3 (11189)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000475880
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11189 | CELF3 | CUGBP Elav-like family memb... | NM_001291106.2 | 99.7% | 99.3% | (many diffs) |
| 2 | human | 11189 | CELF3 | CUGBP Elav-like family memb... | NM_007185.7 | 99.4% | 99.1% | (many diffs) |
| 3 | human | 11189 | CELF3 | CUGBP Elav-like family memb... | NM_001291107.2 | 99.2% | 98.9% | (many diffs) |
| 4 | human | 11189 | CELF3 | CUGBP Elav-like family memb... | NM_001172648.4 | 89.3% | 88.8% | (many diffs) |
| 5 | human | 11189 | CELF3 | CUGBP Elav-like family memb... | XM_011509111.3 | 89% | 88.7% | (many diffs) |
| 6 | human | 11189 | CELF3 | CUGBP Elav-like family memb... | NM_001172649.4 | 88.8% | 88.6% | (many diffs) |
| 7 | human | 11189 | CELF3 | CUGBP Elav-like family memb... | XM_024452760.1 | 83.4% | 82.9% | (many diffs) |
| 8 | human | 11189 | CELF3 | CUGBP Elav-like family memb... | XM_006711139.3 | 83.2% | 82.7% | (many diffs) |
| 9 | human | 11189 | CELF3 | CUGBP Elav-like family memb... | XM_011509112.3 | 83.2% | 82.7% | (many diffs) |
| 10 | human | 11189 | CELF3 | CUGBP Elav-like family memb... | XM_024452758.1 | 83.2% | 82.7% | (many diffs) |
| 11 | human | 11189 | CELF3 | CUGBP Elav-like family memb... | XM_024452759.1 | 83.2% | 82.7% | (many diffs) |
| 12 | human | 11189 | CELF3 | CUGBP Elav-like family memb... | XM_006711141.3 | 83% | 82.5% | (many diffs) |
| 13 | human | 11189 | CELF3 | CUGBP Elav-like family memb... | XM_011509114.3 | 83% | 82.5% | (many diffs) |
| 14 | human | 11189 | CELF3 | CUGBP Elav-like family memb... | XM_024452761.1 | 83% | 82.5% | (many diffs) |
| 15 | mouse | 78784 | Celf3 | CUGBP, Elav-like family mem... | XM_006502325.2 | 93.9% | 98.7% | (many diffs) |
| 16 | mouse | 78784 | Celf3 | CUGBP, Elav-like family mem... | NM_172434.3 | 93.7% | 98.4% | (many diffs) |
| 17 | mouse | 78784 | Celf3 | CUGBP, Elav-like family mem... | NM_001289613.1 | 88.5% | 93.1% | (many diffs) |
| 18 | mouse | 78784 | Celf3 | CUGBP, Elav-like family mem... | XM_006502323.3 | 88.5% | 93.1% | (many diffs) |
| 19 | mouse | 78784 | Celf3 | CUGBP, Elav-like family mem... | XM_006502324.2 | 88.3% | 92.9% | (many diffs) |
| 20 | mouse | 78784 | Celf3 | CUGBP, Elav-like family mem... | XM_006502327.2 | 87.1% | 84.3% | (many diffs) |
| 21 | mouse | 78784 | Celf3 | CUGBP, Elav-like family mem... | XM_011240284.1 | 86.9% | 84.1% | (many diffs) |
| 22 | mouse | 78784 | Celf3 | CUGBP, Elav-like family mem... | XM_006502328.2 | 85.1% | 89.4% | (many diffs) |
| 23 | mouse | 78784 | Celf3 | CUGBP, Elav-like family mem... | XM_017319810.1 | 78.4% | 82.4% | (many diffs) |
| 24 | mouse | 78784 | Celf3 | CUGBP, Elav-like family mem... | NM_001289616.1 | 78.2% | 82.1% | (many diffs) |
| 25 | mouse | 78784 | Celf3 | CUGBP, Elav-like family mem... | XM_006502329.2 | 74% | 77.7% | (many diffs) |
| 26 | mouse | 78784 | Celf3 | CUGBP, Elav-like family mem... | XM_006502330.2 | 74% | 77.7% | (many diffs) |
| 27 | mouse | 78784 | Celf3 | CUGBP, Elav-like family mem... | XM_006502331.2 | 74% | 77.7% | (many diffs) |
| 28 | mouse | 78784 | Celf3 | CUGBP, Elav-like family mem... | XM_006502338.3 | 74% | 77.7% | (many diffs) |
| 29 | mouse | 78784 | Celf3 | CUGBP, Elav-like family mem... | XM_006502332.2 | 73.8% | 77.5% | (many diffs) |
| 30 | mouse | 78784 | Celf3 | CUGBP, Elav-like family mem... | XM_006502334.2 | 73.8% | 77.5% | (many diffs) |
| 31 | mouse | 78784 | Celf3 | CUGBP, Elav-like family mem... | NM_001289620.1 | 71.6% | 68.6% | (many diffs) |
| 32 | mouse | 78784 | Celf3 | CUGBP, Elav-like family mem... | XM_006502335.2 | 69.2% | 72.8% | (many diffs) |
| 33 | mouse | 78784 | Celf3 | CUGBP, Elav-like family mem... | XM_006502336.3 | 69.2% | 72.8% | (many diffs) |
| 34 | mouse | 78784 | Celf3 | CUGBP, Elav-like family mem... | XM_011240286.1 | 45.9% | 44.1% | (many diffs) |
| 35 | mouse | 78784 | Celf3 | CUGBP, Elav-like family mem... | NR_110353.1 | 44.4% | (many diffs) | |
| 36 | mouse | 78784 | Celf3 | CUGBP, Elav-like family mem... | XR_001783780.1 | 42.5% | (many diffs) | |
| 37 | mouse | 78784 | Celf3 | CUGBP, Elav-like family mem... | XR_001783779.1 | 40.4% | (many diffs) | |
| 38 | mouse | 78784 | Celf3 | CUGBP, Elav-like family mem... | XR_001783782.1 | 38.2% | (many diffs) | |
| 39 | mouse | 78784 | Celf3 | CUGBP, Elav-like family mem... | XR_375601.3 | 32.2% | (many diffs) | |
| 40 | mouse | 78784 | Celf3 | CUGBP, Elav-like family mem... | XR_001783781.1 | 31.3% | (many diffs) | |
| 41 | mouse | 78784 | Celf3 | CUGBP, Elav-like family mem... | XR_001783783.1 | 20.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1461
- ORF length:
- 1392
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gaaggagccg gatgccatca agctgtttgt ggggcagatc ccgaggcacc 121 tggaggagaa ggacctgaag cccatcttcg aacagtttgg tcggatcttt gagctgactg 181 tcatcaagga caagtacacc gggctgcaca agggatgtgc cttcctgaca tactgtgccc 241 gggattcagc cctgaaggcc cagagcgccc tgcacgaaca gaagacgctt ccagggatga 301 acaggccgat ccaggtcaag ccagccgaca gcgagagccg aggagaagac cggaagctct 361 ttgtggggat gctagggaag cagcagacag atgaggacgt ccggaagatg tttgagccct 421 tcgggaccat cgacgagtgc actgtgctcc gggggccaga tggcaccagc aaaggctgcg 481 ccttcgtgaa gttccagacc cacgctgagg ccaaggcggc catcaacacc cttcacagca 541 gccggaccct gccaggtgcc tcgtccagcc tggtggtgaa gtttgctgac actgagaagg 601 agcgaggtct ccgccgcatg cagcaggtgg ccacccagtt gggcatgttc agccccatca 661 ccctccagtt tggagcctac agcgcctaca cccaggccct gatgcagcag caggcggccc 721 tggtagcggc tcacagtgcc tacctcagcc ccatggccac catggctgcc gtgcagatgc 781 agcacatggc tgccatcaat gccaatggcc tcatcgccac ccccatcacc ccatcctcag 841 gaaccagcac ccctcctgcc atcgctgcca cgcctgtctc tgccattccg gctgccctgg 901 gcgtcaacgg ctacagccag gtgcccaccc agcccactgg gcagcctgcc cctgatgctc 961 tgtatcccaa cggggttcac ccctacccag cccagagccc cgcggccccc gtggaccccc 1021 tgcagcaggc ctacgcgggg atgcagcact acacagccta cccagcagcc tacagcctgg 1081 ttgcacctgc gttcccgcag cctccagccc tggtcgccca gcagccccca ccaccaccTC 1141 AACAGCAGCA GCAGCAGCAG CAGCAGCAAC AGCAGCAGCA GCAAAGAGAA GGCCCTGATG 1201 GCTGCAACAT CTTCATCTAC CACCTGCCCC AGGAGTTCAC TGACTCAGAG ATCCTCCAGA 1261 TGTTTGTCCC CTTTGGCCAC GTCATCTCAG CCAAAGTCTT TGTTGACCGA GCCACCAATC 1321 AAAGCAAATG TTTTGGCTTT GTGAGTTTCG ACAATCCGGC CAGTGCCCAG GCTGCCATCC 1381 AGGCCATGAA TGGCTTCCAG ATCGGCATGA AGCGCCTCAA AGTCCAGCTA AAGCGGCCTA 1441 AGGATGCCAA CCGGCCCTAC TTGCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC 1501 CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG 1561 AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGATCGT GGCATCAAGG 1621 AAGATTCACG ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt