Construct: ORF ccsbBroadEn_11611

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003699.1_s300c1, BRDN0000456438
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CELF3 (11189)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 11189 CELF3 CUGBP Elav-like family memb... NM_001291106.2 99.7% 99.3% (many diffs)
2 human 11189 CELF3 CUGBP Elav-like family memb... NM_007185.7 99.4% 99.1% (many diffs)
3 human 11189 CELF3 CUGBP Elav-like family memb... NM_001291107.2 99.2% 98.9% (many diffs)
4 human 11189 CELF3 CUGBP Elav-like family memb... NM_001172648.4 89.3% 88.8% (many diffs)
5 human 11189 CELF3 CUGBP Elav-like family memb... XM_011509111.3 89% 88.7% (many diffs)
6 human 11189 CELF3 CUGBP Elav-like family memb... NM_001172649.4 88.8% 88.6% (many diffs)
7 human 11189 CELF3 CUGBP Elav-like family memb... XM_024452760.1 83.4% 82.9% (many diffs)
8 human 11189 CELF3 CUGBP Elav-like family memb... XM_006711139.3 83.2% 82.7% (many diffs)
9 human 11189 CELF3 CUGBP Elav-like family memb... XM_011509112.3 83.2% 82.7% (many diffs)
10 human 11189 CELF3 CUGBP Elav-like family memb... XM_024452758.1 83.2% 82.7% (many diffs)
11 human 11189 CELF3 CUGBP Elav-like family memb... XM_024452759.1 83.2% 82.7% (many diffs)
12 human 11189 CELF3 CUGBP Elav-like family memb... XM_006711141.3 83% 82.5% (many diffs)
13 human 11189 CELF3 CUGBP Elav-like family memb... XM_011509114.3 83% 82.5% (many diffs)
14 human 11189 CELF3 CUGBP Elav-like family memb... XM_024452761.1 83% 82.5% (many diffs)
15 mouse 78784 Celf3 CUGBP, Elav-like family mem... XM_006502325.2 93.9% 98.7% (many diffs)
16 mouse 78784 Celf3 CUGBP, Elav-like family mem... NM_172434.3 93.7% 98.4% (many diffs)
17 mouse 78784 Celf3 CUGBP, Elav-like family mem... NM_001289613.1 88.5% 93.1% (many diffs)
18 mouse 78784 Celf3 CUGBP, Elav-like family mem... XM_006502323.3 88.5% 93.1% (many diffs)
19 mouse 78784 Celf3 CUGBP, Elav-like family mem... XM_006502324.2 88.3% 92.9% (many diffs)
20 mouse 78784 Celf3 CUGBP, Elav-like family mem... XM_006502327.2 87.1% 84.3% (many diffs)
21 mouse 78784 Celf3 CUGBP, Elav-like family mem... XM_011240284.1 86.9% 84.1% (many diffs)
22 mouse 78784 Celf3 CUGBP, Elav-like family mem... XM_006502328.2 85.1% 89.4% (many diffs)
23 mouse 78784 Celf3 CUGBP, Elav-like family mem... XM_017319810.1 78.4% 82.4% (many diffs)
24 mouse 78784 Celf3 CUGBP, Elav-like family mem... NM_001289616.1 78.2% 82.1% (many diffs)
25 mouse 78784 Celf3 CUGBP, Elav-like family mem... XM_006502329.2 74% 77.7% (many diffs)
26 mouse 78784 Celf3 CUGBP, Elav-like family mem... XM_006502330.2 74% 77.7% (many diffs)
27 mouse 78784 Celf3 CUGBP, Elav-like family mem... XM_006502331.2 74% 77.7% (many diffs)
28 mouse 78784 Celf3 CUGBP, Elav-like family mem... XM_006502338.3 74% 77.7% (many diffs)
29 mouse 78784 Celf3 CUGBP, Elav-like family mem... XM_006502332.2 73.8% 77.5% (many diffs)
30 mouse 78784 Celf3 CUGBP, Elav-like family mem... XM_006502334.2 73.8% 77.5% (many diffs)
31 mouse 78784 Celf3 CUGBP, Elav-like family mem... NM_001289620.1 71.6% 68.6% (many diffs)
32 mouse 78784 Celf3 CUGBP, Elav-like family mem... XM_006502335.2 69.2% 72.8% (many diffs)
33 mouse 78784 Celf3 CUGBP, Elav-like family mem... XM_006502336.3 69.2% 72.8% (many diffs)
34 mouse 78784 Celf3 CUGBP, Elav-like family mem... XM_011240286.1 45.9% 44.1% (many diffs)
35 mouse 78784 Celf3 CUGBP, Elav-like family mem... NR_110353.1 44.4% (many diffs)
36 mouse 78784 Celf3 CUGBP, Elav-like family mem... XR_001783780.1 42.5% (many diffs)
37 mouse 78784 Celf3 CUGBP, Elav-like family mem... XR_001783779.1 40.4% (many diffs)
38 mouse 78784 Celf3 CUGBP, Elav-like family mem... XR_001783782.1 38.2% (many diffs)
39 mouse 78784 Celf3 CUGBP, Elav-like family mem... XR_375601.3 32.2% (many diffs)
40 mouse 78784 Celf3 CUGBP, Elav-like family mem... XR_001783781.1 31.3% (many diffs)
41 mouse 78784 Celf3 CUGBP, Elav-like family mem... XR_001783783.1 20.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1461
ORF length:
1392
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GAAGGAGCCG GATGCCATCA AGCTGTTTGT GGGGCAGATC CCGAGGCACC
121TGGAGGAGAA GGACCTGAAG CCCATCTTCG AACAGTTTGG TCGGATCTTT GAGCTGACTG
181TCATCAAGGA CAAGTACACC GGGCTGCACA AGGGATGTGC CTTCCTGACA TACTGTGCCC
241GGGATTCAGC CCTGAAGGCC CAGAGCGCCC TGCACGAACA GAAGACGCTT CCAGGGATGA
301ACAGGCCGAT CCAGGTCAAG CCAGCCGACA GCGAGAGCCG AGGAGAAGAC CGGAAGCTCT
361TTGTGGGGAT GCTAGGGAAG CAGCAGACAG ATGAGGACGT CCGGAAGATG TTTGAGCCCT
421TCGGGACCAT CGACGAGTGC ACTGTGCTCC GGGGGCCAGA TGGCACCAGC AAAGGCTGCG
481CCTTCGTGAA GTTCCAGACC CACGCTGAGG CCAAGGCGGC CATCAACACC CTTCACAGCA
541GCCGGACCCT GCCAGGTGCC TCGTCCAGCC TGGTGGTGAA GTTTGCTGAC ACTGAGAAGG
601AGCGAGGTCT CCGCCGCATG CAGCAGGTGG CCACCCAGTT GGGCATGTTC AGCCCCATCA
661CCCTCCAGTT TGGAGCCTAC AGCGCCTACA CCCAGGCCCT GATGCAGCAG CAGGCGGCCC
721TGGTAGCGGC TCACAGTGCC TACCTCAGCC CCATGGCCAC CATGGCTGCC GTGCAGATGC
781AGCACATGGC TGCCATCAAT GCCAATGGCC TCATCGCCAC CCCCATCACC CCATCCTCAG
841GAACCAGCAC CCCTCCTGCC ATCGCTGCCA CGCCTGTCTC TGCCATTCCG GCTGCCCTGG
901GCGTCAACGG CTACAGCCAG GTGCCCACCC AGCCCACTGG GCAGCCTGCC CCTGATGCTC
961TGTATCCCAA CGGGGTTCAC CCCTACCCAG CCCAGAGCCC CGCGGCCCCC GTGGACCCCC
1021TGCAGCAGGC CTACGCGGGG ATGCAGCACT ACACAGCCTA CCCAGCAGCC TACAGCCTGG
1081TTGCACCTGC GTTCCCGCAG CCTCCAGCCC TGGTCGCCCA GCAGCCCCCA CCACCACCTC
1141AACAGCAGCA GCAGCAGCAG CAGCAGCAAC AGCAGCAGCA GCAAAGAGAA GGCCCTGATG
1201GCTGCAACAT CTTCATCTAC CACCTGCCCC AGGAGTTCAC TGACTCAGAG ATCCTCCAGA
1261TGTTTGTCCC CTTTGGCCAC GTCATCTCAG CCAAAGTCTT TGTTGACCGA GCCACCAATC
1321AAAGCAAATG TTTTGGCTTT GTGAGTTTCG ACAATCCGGC CAGTGCCCAG GCTGCCATCC
1381AGGCCATGAA TGGCTTCCAG ATCGGCATGA AGCGCCTCAA AGTCCAGCTA AAGCGGCCTA
1441AGGATGCCAA CCGGCCCTAC TTGCCAACTT TCTTGTACAA AGTTGGcatt ataagaaagc
1501attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)