Transcript: Mouse XM_006503688.3

PREDICTED: Mus musculus amyloid beta (A4) precursor protein-binding, family B, member 2 (Apbb2), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Apbb2 (11787)
Length:
6443
CDS:
405..2690

Additional Resources:

NCBI RefSeq record:
XM_006503688.3
NBCI Gene record:
Apbb2 (11787)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006503688.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000328168 GCCGCCACCATGTGATATAAA pLKO_005 2847 3UTR 100% 15.000 21.000 N Apbb2 n/a
2 TRCN0000353337 TGCCACAAGTCTCCACGAAAT pLKO_005 2024 CDS 100% 10.800 15.120 N Apbb2 n/a
3 TRCN0000054424 GCCAACATCAAGCTGGTTAAA pLKO.1 687 CDS 100% 13.200 10.560 N Apbb2 n/a
4 TRCN0000328166 TCCGAGAAGCTGGAGGTTAAA pLKO_005 798 CDS 100% 13.200 10.560 N Apbb2 n/a
5 TRCN0000054427 CGATGATTCTTGTAGTATCAA pLKO.1 1619 CDS 100% 5.625 4.500 N Apbb2 n/a
6 TRCN0000328167 TGACATTGCCGGGACCTATTA pLKO_005 1307 CDS 100% 13.200 9.240 N Apbb2 n/a
7 TRCN0000328101 TGCAGTACCTGGGCATGTTAC pLKO_005 2188 CDS 100% 10.800 7.560 N Apbb2 n/a
8 TRCN0000054425 CCACGAAATCTGCTCCAAGAT pLKO.1 2036 CDS 100% 4.950 3.465 N Apbb2 n/a
9 TRCN0000054426 GCTCTAGGAAAGGGTCACTTA pLKO.1 1393 CDS 100% 4.950 3.465 N Apbb2 n/a
10 TRCN0000054423 GCCAACTAACACTGCATCCTT pLKO.1 2991 3UTR 100% 3.000 2.100 N Apbb2 n/a
11 TRCN0000418128 GACATTGCCGGGACCTATTAT pLKO_005 1308 CDS 100% 15.000 21.000 N APBB2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006503688.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10680 pDONR223 100% 38.3% 41.6% None (many diffs) n/a
2 ccsbBroad304_10680 pLX_304 0% 38.3% 41.6% V5 (many diffs) n/a
3 TRCN0000467211 TCGACAATGATCTCATCATGGCAT pLX_317 30.8% 38.3% 41.6% V5 (many diffs) n/a
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