Transcript: Mouse XM_006503927.2

PREDICTED: Mus musculus cytoplasmic polyadenylation element binding protein 2 (Cpeb2), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Cpeb2 (231207)
Length:
8012
CDS:
1157..4234

Additional Resources:

NCBI RefSeq record:
XM_006503927.2
NBCI Gene record:
Cpeb2 (231207)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006503927.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000351028 ACTGCCAGCTTCCGAAGATTT pLKO_005 3509 CDS 100% 13.200 18.480 N Cpeb2 n/a
2 TRCN0000339452 TGTTATAGCACCACCGAAATT pLKO_005 2950 CDS 100% 13.200 18.480 N Cpeb2 n/a
3 TRCN0000192024 CGTCCTTGGAATTTAAGTGAT pLKO.1 3719 CDS 100% 4.950 6.930 N Cpeb2 n/a
4 TRCN0000339451 CTTCCGCTGGAACTAAGTATA pLKO_005 4219 CDS 100% 13.200 9.240 N Cpeb2 n/a
5 TRCN0000339382 CACATCCAGGAACCGACAATC pLKO_005 3270 CDS 100% 10.800 7.560 N Cpeb2 n/a
6 TRCN0000339380 CCTACATCTCAGGCTTACTAA pLKO_005 4411 3UTR 100% 5.625 3.938 N Cpeb2 n/a
7 TRCN0000192926 GCTCAGATTCACTCCAAGATA pLKO.1 3105 CDS 100% 5.625 3.938 N Cpeb2 n/a
8 TRCN0000201053 CCAGGGACTATGAATCAGATA pLKO.1 2900 CDS 100% 4.950 3.465 N Cpeb2 n/a
9 TRCN0000200685 GTCCTTGGAATTTAAGTGATA pLKO.1 3720 CDS 100% 4.950 3.465 N Cpeb2 n/a
10 TRCN0000149728 GAGTTCCATAAGCCATTGGTA pLKO.1 4166 CDS 100% 3.000 2.400 N CPEB2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006503927.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13173 pDONR223 100% 49.6% 52.6% None (many diffs) n/a
2 ccsbBroad304_13173 pLX_304 0% 49.6% 52.6% V5 (many diffs) n/a
3 TRCN0000477873 CAGCACTTATTCCGCAATTATGCG pLX_317 21% 49.6% 52.6% V5 (many diffs) n/a
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