Transcript: Mouse XM_006505010.3

PREDICTED: Mus musculus neurexophilin 1 (Nxph1), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Nxph1 (18231)
Length:
14472
CDS:
1640..2455

Additional Resources:

NCBI RefSeq record:
XM_006505010.3
NBCI Gene record:
Nxph1 (18231)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006505010.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000106545 CGTGTGTAACATGGTGATTTA pLKO.1 3646 3UTR 100% 13.200 9.240 N Nxph1 n/a
2 TRCN0000106549 GAGCAGCAAATCCACGCTAAA pLKO.1 1747 CDS 100% 10.800 7.560 N Nxph1 n/a
3 TRCN0000106548 ACCGTGATTGATGCTAAAGAT pLKO.1 2183 CDS 100% 5.625 3.938 N Nxph1 n/a
4 TRCN0000106547 CCACTGGTCAAGGGAATGTAT pLKO.1 2109 CDS 100% 5.625 3.938 N Nxph1 n/a
5 TRCN0000106546 CCGTGATTGATGCTAAAGATT pLKO.1 2184 CDS 100% 5.625 3.938 N Nxph1 n/a
6 TRCN0000161250 GCACAACAAACCGTGATTGAT pLKO.1 2174 CDS 100% 5.625 3.938 N NXPH1 n/a
7 TRCN0000166364 CACACACACACACACACACAA pLKO.1 6906 3UTR 100% 4.950 2.475 Y KAAG1 n/a
8 TRCN0000158978 GCTTTCATTGTCTGACTCATA pLKO.1 2764 3UTR 100% 4.950 3.465 N NXPH1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006505010.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03130 pDONR223 100% 92.7% 99.6% None (many diffs) n/a
2 ccsbBroad304_03130 pLX_304 0% 92.7% 99.6% V5 (many diffs) n/a
3 TRCN0000472312 TTCTAGCCAACCGTTCTGCATAGT pLX_317 48.6% 92.7% 99.6% V5 (many diffs) n/a
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