Transcript: Mouse XM_006506546.3

PREDICTED: Mus musculus zinc finger protein 467 (Zfp467), transcript variant X9, mRNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Mus musculus (mouse)
Gene:
Zfp467 (68910)
Length:
3613
CDS:
1116..2294

Additional Resources:

NCBI RefSeq record:
XM_006506546.3
NBCI Gene record:
Zfp467 (68910)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006506546.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000085855 GCCCGCTGCTTCAGCTCTAAA pLKO.1 2067 CDS 100% 4.400 3.520 N Zfp467 n/a
2 TRCN0000085853 GCCATTTCTTTAATTGTCCTT pLKO.1 2412 3UTR 100% 2.640 2.112 N Zfp467 n/a
3 TRCN0000085854 CGAGAAACGTTTCCGCAAGAA pLKO.1 1340 CDS 100% 4.950 3.465 N Zfp467 n/a
4 TRCN0000085857 GAAGGCATCCACACAGAACAA pLKO.1 778 5UTR 100% 4.950 3.465 N Zfp467 n/a
5 TRCN0000085856 TGACAGATTTGGGAGACTCAT pLKO.1 2325 3UTR 100% 4.950 3.465 N Zfp467 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006506546.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05144 pDONR223 100% 55% 56.6% None (many diffs) n/a
2 ccsbBroad304_05144 pLX_304 0% 55% 56.6% V5 (many diffs) n/a
3 TRCN0000477927 GAGGTTATGTATTCTAGGAGATGG pLX_317 13.7% 55% 56.6% V5 (many diffs) n/a
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