Transcript: Mouse XM_006511707.3

PREDICTED: Mus musculus topoisomerase (DNA) II binding protein 1 (Topbp1), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Topbp1 (235559)
Length:
5201
CDS:
142..4689

Additional Resources:

NCBI RefSeq record:
XM_006511707.3
NBCI Gene record:
Topbp1 (235559)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006511707.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000124222 CGCTTTATATCTGTGACCGTT pLKO.1 308 CDS 100% 2.640 2.112 N Topbp1 n/a
2 TRCN0000124223 GCCAGAAGAGTTTCCTTGTTT pLKO.1 1811 CDS 100% 5.625 3.938 N Topbp1 n/a
3 TRCN0000331542 GCCAGAAGAGTTTCCTTGTTT pLKO_005 1811 CDS 100% 5.625 3.938 N Topbp1 n/a
4 TRCN0000124220 GCTCTTAGAAACTGCGAGAAT pLKO.1 2310 CDS 100% 4.950 3.465 N Topbp1 n/a
5 TRCN0000302497 GCTCTTAGAAACTGCGAGAAT pLKO_005 2310 CDS 100% 4.950 3.465 N Topbp1 n/a
6 TRCN0000124221 GCTTTATATCTGTGACCGTTT pLKO.1 309 CDS 100% 4.050 2.835 N Topbp1 n/a
7 TRCN0000302500 GCTTTATATCTGTGACCGTTT pLKO_005 309 CDS 100% 4.050 2.835 N Topbp1 n/a
8 TRCN0000124219 CCTGAATTTGAATCACTGGTT pLKO.1 4882 3UTR 100% 2.640 1.848 N Topbp1 n/a
9 TRCN0000302499 CCTGAATTTGAATCACTGGTT pLKO_005 4882 3UTR 100% 2.640 1.848 N Topbp1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006511707.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.