Transcript: Mouse XM_006512771.3

PREDICTED: Mus musculus BEN domain containing 3 (Bend3), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Bend3 (331623)
Length:
6165
CDS:
364..2841

Additional Resources:

NCBI RefSeq record:
XM_006512771.3
NBCI Gene record:
Bend3 (331623)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006512771.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000198216 CCTAGCAAGTTACGCAATCAA pLKO.1 2361 CDS 100% 5.625 7.875 N Bend3 n/a
2 TRCN0000451175 AGACGACATCTCGGTGGTCAA pLKO_005 1869 CDS 100% 4.050 5.670 N Bend3 n/a
3 TRCN0000197685 CGTGATAACTTTAATGGCTTA pLKO.1 4321 3UTR 100% 4.050 3.240 N Bend3 n/a
4 TRCN0000197391 CAATGGACTCACGACTAATAT pLKO.1 963 CDS 100% 15.000 10.500 N Bend3 n/a
5 TRCN0000449832 ACCTGCGCAAGCAGTACAACT pLKO_005 2123 CDS 100% 4.950 3.465 N Bend3 n/a
6 TRCN0000452970 GAGTCTCAGAAGCGGGAATGT pLKO_005 874 CDS 100% 4.950 3.465 N Bend3 n/a
7 TRCN0000177224 GATCCAGAAGATGTTCTACAT pLKO.1 939 CDS 100% 4.950 3.465 N Bend3 n/a
8 TRCN0000441242 TGACTTCTTCAGCCGCTTCTG pLKO_005 1353 CDS 100% 4.050 2.835 N Bend3 n/a
9 TRCN0000176798 CTATGAATGTATACCTAGCAT pLKO.1 2748 CDS 100% 3.000 2.100 N Bend3 n/a
10 TRCN0000443156 CAACTACACAGAGATCTACTT pLKO_005 1710 CDS 100% 4.950 2.970 N Bend3 n/a
11 TRCN0000247562 TGCAGCTCATCCGCAACTATG pLKO_005 1265 CDS 100% 10.800 7.560 N BEND3 n/a
12 TRCN0000166364 CACACACACACACACACACAA pLKO.1 4711 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006512771.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08755 pDONR223 100% 86.1% 90.7% None (many diffs) n/a
2 ccsbBroad304_08755 pLX_304 0% 86.1% 90.7% V5 (many diffs) n/a
3 TRCN0000468756 TCAAGCCAGCCGACGTACGTGCCT pLX_317 5.9% 86.1% 90.7% V5 (many diffs) n/a
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