Transcript: Mouse XM_006513726.3

PREDICTED: Mus musculus receptor accessory protein 3 (Reep3), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Reep3 (28193)
Length:
5293
CDS:
33..752

Additional Resources:

NCBI RefSeq record:
XM_006513726.3
NBCI Gene record:
Reep3 (28193)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006513726.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000429527 ACGTTCGCTGGATGATGTATT pLKO_005 91 CDS 100% 13.200 18.480 N Reep3 n/a
2 TRCN0000420887 CTATGAGACAATGGTGAATTT pLKO_005 329 CDS 100% 13.200 18.480 N Reep3 n/a
3 TRCN0000420758 GGGATTTACGCAATGACTTTA pLKO_005 865 3UTR 100% 13.200 18.480 N Reep3 n/a
4 TRCN0000421856 TGCTCTATCCAGCGTACTATT pLKO_005 34 CDS 100% 13.200 18.480 N Reep3 n/a
5 TRCN0000193048 GAAATCTGTCAAGACCATCAA pLKO.1 662 CDS 100% 4.950 3.960 N Reep3 n/a
6 TRCN0000201422 CCCAGCAATGACTAACATCTT pLKO.1 2122 3UTR 100% 4.950 3.465 N Reep3 n/a
7 TRCN0000190885 CCTGTACTATGAGCTGAAGAT pLKO.1 176 CDS 100% 4.950 3.465 N Reep3 n/a
8 TRCN0000201423 CCTGATGTATTCAGGGCTTAA pLKO.1 814 3UTR 100% 1.080 0.756 N Reep3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006513726.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05248 pDONR223 100% 78.4% 86.2% None (many diffs) n/a
2 ccsbBroad304_05248 pLX_304 0% 78.4% 86.2% V5 (many diffs) n/a
3 TRCN0000472512 GATCCGGGCCGTATGCATCGACCG pLX_317 52.6% 78.4% 86.2% V5 (many diffs) n/a
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