Construct: ORF TRCN0000470805
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006422.1_s317c1
- Derived from:
- ccsbBroadEn_08523
- DNA Barcode:
- GTGCTAACCTGGTGTTCCTGAGCC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC39A9 (55334)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000470805
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55334 | SLC39A9 | solute carrier family 39 me... | NM_018375.5 | 99.8% | 99.6% | 853C>T |
| 2 | human | 55334 | SLC39A9 | solute carrier family 39 me... | NM_001252148.2 | 92.3% | 92.1% | 402_403ins69;784C>T |
| 3 | human | 55334 | SLC39A9 | solute carrier family 39 me... | NM_001330185.2 | 78.3% | 78.1% | 204_205ins198;655C>T |
| 4 | human | 55334 | SLC39A9 | solute carrier family 39 me... | NM_001252150.2 | 75.4% | 75.2% | 693_694insAGCAGTAAA;696_696delTins217 |
| 5 | human | 55334 | SLC39A9 | solute carrier family 39 me... | NM_001252151.2 | 61.4% | 61.2% | 0_1ins354;499C>T |
| 6 | human | 55334 | SLC39A9 | solute carrier family 39 me... | NM_001252152.2 | 61.4% | 61.2% | 0_1ins354;499C>T |
| 7 | human | 55334 | SLC39A9 | solute carrier family 39 me... | XM_017021426.2 | 61.4% | 61.2% | 0_1ins354;499C>T |
| 8 | human | 55334 | SLC39A9 | solute carrier family 39 me... | XM_024449648.1 | 61.4% | 61.2% | 0_1ins354;499C>T |
| 9 | mouse | 328133 | Slc39a9 | solute carrier family 39 (z... | NM_026244.2 | 89.4% | 92.8% | (many diffs) |
| 10 | mouse | 328133 | Slc39a9 | solute carrier family 39 (z... | XM_017315121.1 | 89.4% | 92.8% | (many diffs) |
| 11 | mouse | 328133 | Slc39a9 | solute carrier family 39 (z... | XM_006516034.3 | 81.3% | 81.6% | (many diffs) |
| 12 | mouse | 328133 | Slc39a9 | solute carrier family 39 (z... | XM_006516032.3 | 67.9% | 70% | (many diffs) |
| 13 | mouse | 328133 | Slc39a9 | solute carrier family 39 (z... | XM_006516033.3 | 57.8% | 47.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 987
- ORF length:
- 921
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgga tgatttcatc tccattagcc tgctgtctct ggctatgttg gtgggatgtt 121 acgtggccgg aatcattccc ttggctgtta atttctcaga ggaacgactg aagctggtga 181 ctgttttggg tgctggcctt ctctgtggaa ctgctctggc agtcatcgtg cctgaaggag 241 tacatgccct ttatgaagat attcttgagg gaaaacacca ccaagcaagt gaaacacata 301 atgtgattgc atcagacaaa gcagcagaaa aatcagttgt ccatgaacat gagcacagcc 361 acgaccacac acagctgcat gcctatattg gtgtttccct cgttctgggc ttcgttttca 421 tgttgctggt ggaccagatt ggtaactccc atgtgcattc tactgacgat ccagaagcag 481 caaggtctag caattccaaa aTCACCACCA CGCTGGGTCT GGTTGTCCAT GCTGCAGCTG 541 ATGGTGTTGC TTTGGGAGCA GCAGCATCTA CTTCACAGAC CAGTGTCCAG TTAATTGTGT 601 TTGTGGCAAT CATGCTACAT AAGGCACCAG CTGCTTTTGG ACTGGTTTCC TTCTTGATGC 661 ATGCTGGCTT AGAGCGGAAT CGAATCAGAA AGCACTTGCT GGTCTTTGCA TTGGCAGCAC 721 CAGTTATGTC CATGGTGACA TACTTAGGAC TGAGTAAGAG CAGTAAAGAA GCCCTTTCAG 781 AGGTGAACGC CACGGGAGTG GCCATGCTTT TCTCTGCCGG GACATTTCTT TATGTTGCCA 841 CAGTACATGT CCTCCCTGAG GTGGGCGGAA TAGGGCACAG CCACAAGCCC GATGCCACGG 901 GAGGGAGAGG CCTCAGCTGC CTGGAAGTGG CAGCCCTGGT TCTGGGTTGC CTCATCCCTC 961 TCATCCTGTC AGTAGGACAC CAGCATTACC CAACTTTCTT GTACAAAGTG GTTGATATCG 1021 GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT 1081 AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GAGTGCTAAC 1141 CTGGTGTTCC TGAGCCACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga 1201 aagatt