Transcript: Mouse XM_006526218.3

PREDICTED: Mus musculus dymeclin (Dym), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Dym (69190)
Length:
3462
CDS:
339..1916

Additional Resources:

NCBI RefSeq record:
XM_006526218.3
NBCI Gene record:
Dym (69190)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006526218.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000219621 ATGTCTATATGGCCCTTATAA pLKO.1 1516 CDS 100% 15.000 21.000 N Dym n/a
2 TRCN0000193324 CCATTTCAGTTTGCAAGTCTT pLKO.1 508 CDS 100% 4.950 6.930 N Dym n/a
3 TRCN0000193180 CATTTCAGTTTGCAAGTCTTT pLKO.1 509 CDS 100% 4.950 3.960 N Dym n/a
4 TRCN0000173622 GCCTCCTAATTCTGGTGGTAA pLKO.1 1648 CDS 100% 4.950 3.960 N Dym n/a
5 TRCN0000173391 GCAGACACACAATGCTCTGTT pLKO.1 641 CDS 100% 4.950 3.465 N Dym n/a
6 TRCN0000193818 CATCAGTCACAAGTACCTGAT pLKO.1 926 CDS 100% 0.405 0.243 N Dym n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006526218.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08410 pDONR223 100% 64.6% 68.3% None (many diffs) n/a
2 ccsbBroad304_08410 pLX_304 0% 64.6% 68.3% V5 (many diffs) n/a
3 TRCN0000475275 GAATCTTAACCAGAACTAATTATC pLX_317 23% 64.6% 68.3% V5 (many diffs) n/a
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