Transcript: Mouse XM_006530066.3

PREDICTED: Mus musculus tumor protein D52 (Tpd52), transcript variant X6, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Tpd52 (21985)
Length:
2704
CDS:
349..1086

Additional Resources:

NCBI RefSeq record:
XM_006530066.3
NBCI Gene record:
Tpd52 (21985)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006530066.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000011854 GTTGGCTCAGTCATCACCAAA pLKO.1 808 CDS 100% 4.950 6.930 N Tpd52 n/a
2 TRCN0000273014 TACTATCTACATGAATCATTG pLKO_005 1401 3UTR 100% 10.800 8.640 N Tpd52 n/a
3 TRCN0000011853 GCCTCCATTAAATCCATTTAA pLKO.1 1962 3UTR 100% 1.500 1.200 N Tpd52 n/a
4 TRCN0000011857 CCAGACTCTGTCCCAAGTATT pLKO.1 609 CDS 100% 13.200 9.240 N Tpd52 n/a
5 TRCN0000319799 CCAGACTCTGTCCCAAGTATT pLKO_005 609 CDS 100% 13.200 9.240 N Tpd52 n/a
6 TRCN0000011855 GCATACAAGAAGACCTCTGAA pLKO.1 742 CDS 100% 4.950 3.465 N Tpd52 n/a
7 TRCN0000273015 GCATACAAGAAGACCTCTGAA pLKO_005 742 CDS 100% 4.950 3.465 N Tpd52 n/a
8 TRCN0000011856 CCACAGCCAACGCTACCAGTA pLKO.1 1019 CDS 100% 1.350 0.945 N Tpd52 n/a
9 TRCN0000284923 CCACAGCCAACGCTACCAGTA pLKO_005 1019 CDS 100% 1.350 0.945 N Tpd52 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006530066.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01697 pDONR223 100% 62.7% 64.8% None (many diffs) n/a
2 ccsbBroad304_01697 pLX_304 0% 62.7% 64.8% V5 (many diffs) n/a
3 TRCN0000478943 CTATCCAACCGCCATGACGAGAGT pLX_317 61.1% 62.7% 64.8% V5 (many diffs) n/a
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