Transcript: Mouse XM_006530753.2

PREDICTED: Mus musculus nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3 (Nfatc3), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Nfatc3 (18021)
Length:
6137
CDS:
308..3514

Additional Resources:

NCBI RefSeq record:
XM_006530753.2
NBCI Gene record:
Nfatc3 (18021)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006530753.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000377122 ATGATTGTGACTGGATCTAAT pLKO_005 2162 CDS 100% 13.200 9.240 N Nfatc3 n/a
2 TRCN0000097133 CCAGATGATTGTGCATCCATT pLKO.1 419 CDS 100% 4.950 3.465 N Nfatc3 n/a
3 TRCN0000308440 CCAGATGATTGTGCATCCATT pLKO_005 419 CDS 100% 4.950 3.465 N Nfatc3 n/a
4 TRCN0000097131 CCTATCATAACCCAGCAGTTA pLKO.1 2307 CDS 100% 4.950 3.465 N Nfatc3 n/a
5 TRCN0000097130 GCTCACATTGTCCTTGAAGTT pLKO.1 2282 CDS 100% 4.950 3.465 N Nfatc3 n/a
6 TRCN0000308439 GCTCACATTGTCCTTGAAGTT pLKO_005 2282 CDS 100% 4.950 3.465 N Nfatc3 n/a
7 TRCN0000097129 GTGGGAAACGAGCTTTGCTTT pLKO.1 3814 3UTR 100% 4.950 3.465 N Nfatc3 n/a
8 TRCN0000097132 CCTGGCATCAACAGTATGGAT pLKO.1 981 CDS 100% 3.000 2.100 N Nfatc3 n/a
9 TRCN0000308369 CCTGGCATCAACAGTATGGAT pLKO_005 981 CDS 100% 3.000 2.100 N Nfatc3 n/a
10 TRCN0000422320 GTGAAGCTCCTGGGCTATAAC pLKO_005 1706 CDS 100% 13.200 9.240 N NFATC3 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006530753.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01088 pDONR223 100% 87.7% 86.5% None (many diffs) n/a
2 ccsbBroad304_01088 pLX_304 0% 87.7% 86.5% V5 (many diffs) n/a
3 TRCN0000472264 CTGGGGCATATCTTGTTACGGACC pLX_317 12.3% 87.7% 86.5% V5 (many diffs) n/a
Download CSV